Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
CTWPAWEHFKRAYISDGGRVIDPSDARKITTSEGQSYALFFALAADDRPMFDNVLEWTKDNLAQGDPGEHLPAWLWGKKD
ENNWTVLDSNSASDADIWIAWSLLEAGRLWKEARYTTLGNALLNRIAKEEVVTVPGLGPMLLPGKVGFAEETVWRLNPSY
LPPQIARYLTRFGEPWTTLQETNHRLLLETAPKGFSPDWVRYEKSKGWQLAPDKTLISGYAAIRVYLWVGMMNDHDAQKA
SLLERLKPMAALTAKKGVVPEKVDVATAQPRGDGPVGFAAALLPFLQDRDAQAVQRQKVADHFPGDDAYFSYVLTLFGQG
WDEHRFRFTPRGELQPDW

The query sequence (length=338) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7f82:A 338 338 1.0000 1.0000 1.0000 0.0 7f82:B, 7f82:C, 7f82:D
2 3qxq:A 338 338 0.7515 0.7515 0.7515 0.0 3qxq:B, 3qxq:C, 3qxq:D
3 1kwf:A 363 283 0.1982 0.1846 0.2367 8.50e-06
4 6g0b:A 393 152 0.1006 0.0865 0.2237 0.008 6g09:A, 6g0n:A
5 2b4f:A 404 138 0.1065 0.0891 0.2609 0.35 1h12:A, 1xwq:A
6 1wu5:A 376 85 0.0651 0.0585 0.2588 0.37 1wu6:A
7 7e13:A 475 89 0.0917 0.0653 0.3483 0.55 7e13:B, 7e13:C, 7e13:D
8 5meh:A 438 91 0.0828 0.0639 0.3077 0.62 4ayp:A, 4ayq:A, 4ayr:A, 8b5m:A, 5ne5:A
9 2rar:A 261 63 0.0621 0.0805 0.3333 3.9 2rav:A, 2rb5:A, 2rbk:A, 1ymq:A
10 7drc:C 906 41 0.0444 0.0166 0.3659 8.8 7drb:C, 7drb:D, 7w3v:C, 7w3x:C
11 7ye1:C 1312 45 0.0562 0.0145 0.4222 10.0 7ye2:C

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218