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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
CTSVVAQDSRGHIYHGRNLDYPFGDLLRKMTVDVQFLKNGQIAFTGTTFIGYVGLWTGQSPYKFTVSGDERADKGWWWEN
MIAALFQGHSPVSWLIRTTLSESEDFEASVYKLAKTPLIADVYYIVGGTAPGEGVVVTRNRGGPADIWPLDPLNGAWFRV
ETNYDHWKPVPKSDDRRTPAIKALNATGQANLSLEALFQVLSVVPVCNKITVYTTVMSAATPDKYMTRIRNL

The query sequence (length=232) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6dy2:B 232 232 1.0000 1.0000 1.0000 5.24e-176 6dy2:D
2 6dxx:B 231 231 0.8750 0.8788 0.8788 3.04e-153 6dxx:D, 6dxx:F
3 6dy0:B 231 231 0.8405 0.8442 0.8442 7.24e-150 6dxz:B
4 6mhm:B 253 247 0.4052 0.3715 0.3806 5.41e-54 6mhm:D
5 5u81:A 369 246 0.3879 0.2439 0.3659 4.96e-49
6 5u84:B 353 243 0.3750 0.2465 0.3580 2.25e-46 5u84:A
7 9cp7:A 436 80 0.0948 0.0505 0.2750 1.1 9cp7:B, 9cp8:A, 9cp8:B, 9cp9:A, 9cp9:B, 8v35:A, 8v36:A, 8v37:A
8 8gr9:A 432 47 0.0776 0.0417 0.3830 1.1
9 1v9h:A 193 108 0.1207 0.1451 0.2593 1.6 1j1f:A, 1j1g:A, 1uca:A, 1ucc:A, 1ucd:A
10 8sy6:J 1269 93 0.0991 0.0181 0.2473 2.1
11 8esi:A 316 23 0.0517 0.0380 0.5217 2.4 8esi:B, 8esi:C, 8esi:D, 8esi:E, 8esi:F, 8esi:G, 8esi:H, 8ete:A, 8ete:B
12 6tu2:A 314 47 0.0733 0.0541 0.3617 3.3 6tu2:B, 6tu2:C
13 5yjl:B 415 70 0.0776 0.0434 0.2571 4.7 5yjl:A
14 8etk:A 321 20 0.0431 0.0312 0.5000 6.8 8etk:B, 8ewt:A, 8ewt:B, 7svg:A, 7svg:D
15 7eo3:A 282 67 0.0948 0.0780 0.3284 6.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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