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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
CTSILYSPKDHYFGRNLDYEIAYGQKVVITPRNYEFKFANLPAEKSHYAMIGIAAVANNTPLYCDAINEKGLGVAGLSFA
GQGKYFPVVEDKKNIASFEFISYILATYETVDQVKENLTDVNISDVSFSKNTPASELHWLVGDKTGKSIVVESDEKGLHV
YDNPVNALTNAPLFPQQLTNLANYAAVVPGQPNNDFLPGVDLKMYSRSLGTHHLPGGMDSESRFVKVCFALNHAPKDSDE
VESVTNFFHILQSVEQVKGMDEVGPNIFEYTMYTSCMNLEKGILYFNCYDDSRISAVDMNKEDLSSSDLIVFDLFKKQDI
SFIN

The query sequence (length=324) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8etf:C 330 324 1.0000 0.9818 1.0000 0.0 8esg:A, 8esg:H, 8etf:H, 8etf:A, 8etf:B, 8etf:D, 8etf:E, 8etf:F, 8etf:G, 8fao:H, 8fao:A, 8fao:B, 8fao:C, 8fao:D, 8fao:E, 8fao:F, 8fao:G
2 7svj:B 326 326 0.4784 0.4755 0.4755 2.64e-108
3 5y7p:A 327 325 0.4290 0.4251 0.4277 2.82e-87 8bls:A, 8bls:B, 8bls:C, 8bls:D, 8bls:E, 8bls:F, 8bls:G, 8bls:H, 8blt:A, 8blt:B, 8blt:C, 8blt:D, 8blt:E, 8blt:F, 8blt:G, 8blt:H, 5y7p:F
4 2bjf:A 328 330 0.3796 0.3750 0.3727 1.50e-71 2rlc:A
5 8esi:A 316 317 0.3519 0.3608 0.3596 1.36e-63 8esi:B, 8esi:C, 8esi:D, 8esi:E, 8esi:F, 8esi:G, 8esi:H, 8ete:A, 8ete:B
6 8vsy:B 320 316 0.3611 0.3656 0.3703 6.55e-61 8u7n:B, 8vrx:B, 8vsy:A
7 2z71:C 331 329 0.3519 0.3444 0.3465 1.05e-52 2z71:A
8 8etk:A 321 317 0.3210 0.3240 0.3281 6.71e-52 8etk:B, 8ewt:A, 8ewt:B, 7svg:A, 7svg:D
9 8esl:A 309 309 0.2315 0.2427 0.2427 7.66e-14 8esl:B, 8esl:C, 8esl:D
10 6uh4:B 326 310 0.2160 0.2147 0.2258 3.24e-12
11 5eqx:A 439 140 0.1111 0.0820 0.2571 0.050
12 2w94:A 254 61 0.0494 0.0630 0.2623 0.59 2w94:B, 2w94:C, 2w95:A, 2w95:B, 2w95:C, 2wn2:A, 2wn2:B, 2wn2:C, 2wn3:A, 2wn3:B, 2wn3:C
13 1ydn:A 283 130 0.1142 0.1307 0.2846 0.63 1ydn:B, 1ydn:C, 1ydn:D
14 2arc:B 164 41 0.0401 0.0793 0.3171 3.0 2aac:A, 2aac:B, 2arc:A
15 4ls9:A 319 86 0.0710 0.0721 0.2674 3.1 4ls9:B
16 4lt6:A 467 56 0.0679 0.0471 0.3929 3.7 4lt6:B
17 6lja:A 841 104 0.0957 0.0369 0.2981 3.8 6ljl:A
18 6clv:C 257 108 0.0802 0.1012 0.2407 4.9 1ad4:A, 6clv:A, 6clv:B
19 6cds:A 325 35 0.0432 0.0431 0.4000 6.4 6cds:B, 7lwh:A, 4p7i:A, 4p7i:B, 3wa0:A, 3wa0:B, 3wa0:C, 3wa0:E, 3wa0:F, 4zri:A, 4zri:B, 4zrk:A, 4zrk:C, 4zrk:B, 4zrk:D
20 4bjh:A 422 97 0.0833 0.0640 0.2784 6.5 3d6n:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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