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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
CTAITLNGNSNYFGRNLDLDFSYGEEVIITPAEYEFKFRKEKAIKNHKSLIGVGIVANDYPLYFDAINEDGLGMAGLNFP
GNAYYSDALENDKDNITPFEFIPWILGQCSDVNEARNLVEKINLINLSFSEQLPLAGLHWLIADREKSIVVEVTKSGVHI
YDNPIGILTNNPEFNYQMYNLNKYRNLSISTPQNTFSDSVDLKVDGTGFGGIGLPGDVSPESRFVRATFSKLNSSKGMTV
EEDITQFFHILGTVEQIKGVNKTESGKEEYTVYSNCYDLDNKTLYYTTYENRQIVAVTLNGNRLVTYPFERKQIINKLNL
E

The query sequence (length=321) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5y7p:A 327 325 1.0000 0.9817 0.9877 0.0 8bls:A, 8bls:B, 8bls:C, 8bls:D, 8bls:E, 8bls:F, 8bls:G, 8bls:H, 8blt:A, 8blt:B, 8blt:C, 8blt:D, 8blt:E, 8blt:F, 8blt:G, 8blt:H, 5y7p:F
2 7svj:B 326 327 0.5016 0.4939 0.4924 1.95e-113
3 8etf:C 330 325 0.4268 0.4152 0.4215 1.62e-85 8esg:A, 8esg:H, 8etf:H, 8etf:A, 8etf:B, 8etf:D, 8etf:E, 8etf:F, 8etf:G, 8fao:H, 8fao:A, 8fao:B, 8fao:C, 8fao:D, 8fao:E, 8fao:F, 8fao:G
4 8etk:A 321 316 0.3645 0.3645 0.3703 8.72e-71 8etk:B, 8ewt:A, 8ewt:B, 7svg:A, 7svg:D
5 2bjf:A 328 329 0.3738 0.3659 0.3647 8.29e-69 2rlc:A
6 8vsy:B 320 303 0.3333 0.3344 0.3531 1.75e-61 8u7n:B, 8vrx:B, 8vsy:A
7 8esi:A 316 306 0.3364 0.3418 0.3529 1.87e-59 8esi:B, 8esi:C, 8esi:D, 8esi:E, 8esi:F, 8esi:G, 8esi:H, 8ete:A, 8ete:B
8 2z71:C 331 330 0.3271 0.3172 0.3182 5.26e-51 2z71:A
9 8esl:A 309 167 0.1308 0.1359 0.2515 0.34 8esl:B, 8esl:C, 8esl:D
10 3lqv:B 115 64 0.0561 0.1565 0.2812 0.56 2f9j:B, 3lqv:A, 7q4o:F, 8qo9:B6, 8qxd:B6, 8qzs:B6, 8r08:B6, 8r09:B6, 8r0a:B6, 8r0b:B6, 8rm5:B6
11 6uh4:B 326 280 0.1745 0.1718 0.2000 0.66
12 8wte:D 239 98 0.0810 0.1088 0.2653 1.3 7na5:E, 8wte:B, 8wul:D, 8wul:B, 8wul:F, 8wul:H
13 8b2a:BBB 238 45 0.0498 0.0672 0.3556 9.3 8b2a:AAA, 1sfj:A, 1sfj:B, 6sfh:A, 6sfh:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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