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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
CSWNDVFQYETNKVTRIQSVNYGTIKWILHMTVFSYVSFALMSDKLYQRKEPLISSVHTKVKGVAEVTENVTEGGVTKLV
HGIFDTADYTLPLQGNSFFVMTNYLKSEGQEQKLCPEYPSRGKQCHSDQGCIKGWMDPQSKGIQTGRCIPYDQKRKTCEI
FAWCPAEEGKEAPRPALLRSAENFTVLIKNNIDFPGHNYTTRNILPGMNISCTFHKTWNPQCPIFRLGDIFQEIGENFTE
VAVQGGIMGIEIYWDCNLDSWSHRCQPKYSFRRLDDKYTNESLFPGYNFRYAKYYKENGMEKRTLIKAFGVRFDILVFGT
GGKFDIIQLVVYIGSTLSYFGLATVCIDLIINTYASTCCRSRVYPSCKCCEPCAVNEYYYRKKCEPIVEPKPTLKYVSFV
DEPHIWMVDQQLLGKSLQDVKGQEVPRPQTDFLELSRLDSPDWCQCGNCLPSQLPENRRALEELCCRRKPGQCITTSELF
SKIVLSREALQLLLLYQEPLLALEGEAINSKLRHCAYRSYATWRFVSQDMADFAILPSCCRWKIRKEFPKTQGQYSGFKY
PY

The query sequence (length=562) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6u9w:A 562 562 1.0000 1.0000 1.0000 0.0 8tr5:A, 8tr5:B, 8tr5:C, 8trj:A, 8trj:C, 8trj:B, 6u9v:A, 6u9v:B, 6u9v:C, 6u9w:B, 6u9w:C, 8v4s:A, 8v4s:B, 8v4s:C
2 5u1x:A 321 321 0.4395 0.7695 0.7695 0.0 8jv7:A, 8jv7:B, 8jv7:C, 8jv8:A, 8jv8:B, 8jv8:C, 5u1u:A, 5u1y:A
3 5xw6:C 320 332 0.3043 0.5344 0.5151 4.82e-120 5xw6:B, 5xw6:A
4 4dw1:A 324 325 0.2687 0.4660 0.4646 8.93e-97 8jv5:A, 8jv5:B, 8jv5:C, 8jv6:A, 8jv6:B, 8jv6:C, 5wzy:A
5 6ah4:B 357 354 0.2633 0.4146 0.4181 1.74e-80 6ah4:C, 6ah4:A, 6ah5:C, 6ah5:A, 6ah5:B, 9ik1:A, 9ik1:B, 9ik1:C, 5svk:A, 5svk:B, 5svl:A, 5svl:B, 5svm:A, 5svm:B, 5svp:A, 5svp:B, 5svq:A, 5svr:A, 5yve:A
6 5f1c:B 355 350 0.2278 0.3606 0.3657 1.37e-61 5f1c:A, 5f1c:C
7 3w20:A 254 79 0.0409 0.0906 0.2911 0.66 3w21:A, 3w21:B
8 5c2t:A 616 179 0.0730 0.0666 0.2291 4.4 5c2t:E, 5c3j:A, 5c3j:E, 3vr8:A, 3vr8:E, 3vr9:A, 3vr9:E, 3vra:A, 3vra:E, 3vrb:A, 3vrb:E, 4ysx:A, 4ysx:E, 4ysy:A, 4ysy:E, 4ysz:A, 4ysz:E, 4yt0:A, 4yt0:E, 4ytm:A, 4ytm:E, 4ytn:A, 4ytn:E
9 5kvv:A 327 37 0.0267 0.0459 0.4054 8.3 5kvv:B
10 4bts:AR 338 55 0.0267 0.0444 0.2727 8.7 4bts:BR, 4bts:CR, 4bts:DR, 4v5o:AR, 4v5o:BR

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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