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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
CSARYNLAILAFFGFFIVYALRVNLSVALVDMVDSKKYQWDAETQGWILGSFFYGYIITQIPGGYVASKIGGKMLLGFGI
LGTAVLTLFTPIAADLGVGPLIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSGIICYY
MNWTYVFYFFGTIGIFWFLLWIWLVSDTPQKHKRISHYEKEYILSSLRNQLSSQKSVPWVPILKSLPLWAIVVAHFSYNW
TFYTLLTLLPTYMKEILRFNVQENGFLSSLPYLGSWLCMILSGQAADNLRAKWNFSTLCVRRIFSLIGMIGPAVFLVAAG
FIGCDYSLAVAFLTISTTLGGFCSSGFSINHLDIAPSYAGILLGITNTFATIPGMVGPVIAKSLTPDNTVGEWQTVFYIA
AAINVFGAIFFTLFAKGEVQNWALN

The query sequence (length=425) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8u3g:A 427 427 1.0000 0.9953 0.9953 0.0 8u3h:A
2 7t3n:A 452 438 0.4376 0.4115 0.4247 5.13e-120
3 6e9n:A 409 326 0.2165 0.2249 0.2822 2.61e-27 6e9o:B, 6e9o:A
4 8ttg:A 374 161 0.0847 0.0963 0.2236 1.51e-05 8tte:A
5 5bk7:H 369 118 0.0824 0.0949 0.2966 0.25 5bk7:A, 5bk7:B, 5bk7:C, 5bk7:D, 5bk7:E, 5bk7:F, 5bk7:G, 6c8t:A, 6c8t:B, 6c8t:C, 6c92:A, 6c92:B, 6c92:C, 6c92:D, 6c9b:B, 5dj3:A, 5dj3:B, 5dj3:C, 5dj3:D
6 8wvg:A 394 230 0.1271 0.1371 0.2348 0.58 8jsw:A, 8jsx:A, 8jt5:A, 8jt9:A, 8jta:A, 8jtb:A, 8jtc:A, 8t69:A, 8t6a:A, 8t6b:A, 8thr:A, 8wlk:A, 8wll:A, 8wlm:A, 8wre:A, 8xo9:A, 8xoa:A
7 6syt:A 1896 29 0.0282 0.0063 0.4138 1.6
8 7xv3:R 289 83 0.0518 0.0761 0.2651 1.6 8izb:R, 8kh5:A
9 7pw9:A 1952 29 0.0282 0.0061 0.4138 1.6 7pw4:A, 7pw5:A, 7pw6:A, 7pw7:A, 7pw8:A, 6z3r:A
10 8hpk:A 390 142 0.0894 0.0974 0.2676 2.0
11 6kki:A 366 85 0.0635 0.0738 0.3176 2.4
12 8zmr:A 384 79 0.0494 0.0547 0.2658 3.2
13 5ngg:A 274 34 0.0329 0.0511 0.4118 6.5 2gmn:A, 2gmn:B, 3lvz:A, 3lvz:B, 5ngg:B, 5njw:A, 5njw:B, 5wcm:A, 5wcm:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218