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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
CRAVRSLLRSHYREVLPLATFVRRLGPQGWRLVQRGDPAAFRALVAQCLVCVPWDARPPPAAPSFRQVSCLKELVARVLQ
RLCERGAKNVLAFGFALLPEAFTTSVRSYLPNTVTDALRGSGAWGLLLRRVGDDVLVHLLARCALFVLVAPSCAYQVCGP
PLYQLGPPVYAETKHFLYSSGDKEQLRPSFLLSSLRPSLTGARRLVETIFLGSRPWMPGTPRRLPRLPQRYWQMRPLFLE
LLGNHAQCPYGVLLKTHCPLRADPRRLVQLLRQHSSPWQVYGFVRACLRRLVPPGLWGSRHNERRFLRNTKKFISLGKHA
KLSLQELTWKMSVRDCAWLRRSPGVGCVPAAEHRLREEILAKFLHWLMSVYVVELLRSFFYVTETTFQKNRLFFYRKSVW
SKLQSIGIRQHLKRVQLRELSEAEVRQHREARPALLTSRLRFIPKPDGLRPIVNMDYVVGARTFRREKRAERLTSRVKAL
FSVLNYERARRPGLLGASVLGLDDIHRAWRTFVLRVRAQDPPPELYFVKVDVTGAYDTIPQDRLTEVIASIIKPQNTYCV
RRYAVVQKAAHGHVRKAFKSHVSTLTDLQPYMRQFVAHLQETSPLRDAVVIEQSSSLNEASSGLFDVFLRFMCHHAVRIR
GKSYVQCQGIPQGSILSTLLCSLCYGDMENKLFAGIRRDGLLLRLVDDFLLVTPHLTHAKTFLRTLVRGVPEYGCVVNLR
KTVVNFPVEDEALGGTAFVQMPAHGLFPWCGLLLDTRTLEVQSDYSSYARTSIRASLTFNRGFKAGRNMRRKLFGVLRLK
CHSLFLDLQVNSLQTVCTNIYKILLLQAYRFHACVLQLPFHQQVWKNPTFFLRVISDTASLCYSILKAKNAGMSLGAKGA
AGPLPSEAVQWLCHQAFLLKLTRHRVTYVPLLGSLRTAQTQLSRKLPGTTLTALEAAANPALPSDFKTILD

The query sequence (length=951) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7qxa:A 954 951 1.0000 0.9969 1.0000 0.0 7bg9:A, 7qxb:A, 7qxs:A, 7trd:A, 7tre:A, 7trf:A
2 7v99:A 991 986 1.0000 0.9596 0.9645 0.0 5ugw:A
3 4o26:A 240 246 0.0999 0.3958 0.3862 3.30e-41 4o26:B
4 6zdp:A 683 636 0.1672 0.2328 0.2500 1.07e-35
5 6d6v:A 980 665 0.1546 0.1500 0.2211 8.96e-28 5c9h:B
6 8gap:A 1012 668 0.1514 0.1423 0.2156 1.57e-26 5c9h:A, 7lma:A, 7lmb:A, 7uy5:A, 7uy6:A
7 6zdu:A 693 686 0.1630 0.2237 0.2259 4.39e-21 6zdq:A, 6zdu:B
8 5cqg:A 596 216 0.0610 0.0973 0.2685 1.45e-09 5cqg:B, 6e53:A, 7kqm:A, 7kqn:A, 7kqn:D, 3kyl:A, 6uso:A, 6usp:A, 6usq:A, 6usr:A
9 5cqg:A 596 268 0.0641 0.1023 0.2276 0.076 5cqg:B, 6e53:A, 7kqm:A, 7kqn:A, 7kqn:D, 3kyl:A, 6uso:A, 6usp:A, 6usq:A, 6usr:A
10 9c0i:A 425 130 0.0400 0.0894 0.2923 0.005 9c0j:A
11 8fli:B 458 77 0.0210 0.0437 0.2597 0.23 6me0:C, 6mec:C
12 5hhk:B 289 88 0.0294 0.0969 0.3182 0.28
13 5xe0:A 457 73 0.0179 0.0372 0.2329 0.77 5zit:A
14 7v9x:A 314 97 0.0305 0.0924 0.2990 0.93 8qbk:A, 8qbk:U, 8qbk:K, 8qbk:P, 8qbl:A, 8qbl:K, 8qbl:P, 8qbl:I, 8qbl:U, 8qbl:Z, 8qbm:A, 8qbm:K, 8qbm:I, 8qbm:P, 8qbm:U, 8qbm:Z, 7v9u:A, 7v9u:B, 7v9x:B, 7xjg:A, 7xjg:B
15 1ef9:A 261 51 0.0179 0.0651 0.3333 1.4 6n92:A, 6n92:B, 6n92:C, 6n92:D, 6n92:E, 6n92:F, 6n93:A, 6n93:B, 6n93:C, 6n93:D, 6n93:E, 6n93:F, 6n94:A, 6n94:B, 6n94:C, 6n94:D, 6n94:E, 6n94:F, 6n95:A, 6n95:B, 6n95:C, 6n95:D, 6n95:E, 6n95:F, 6n96:A, 6n96:B, 6n96:C, 6n96:D, 6n96:E, 6n96:F, 6n97:A, 6n97:B, 6n97:C, 6n97:D, 6n97:E, 6n97:F
16 4xlv:A 310 131 0.0315 0.0968 0.2290 4.4 2auh:A, 3bu3:A, 3bu5:A, 3bu6:A, 5e1s:A, 3ekk:A, 3ekn:A, 3eta:A, 3eta:B, 1gag:A, 5hhw:A, 1i44:A, 4ibm:A, 4ibm:B, 1ir3:A, 1rqq:A, 1rqq:B, 2z8c:A
17 5fxs:A 308 84 0.0273 0.0844 0.3095 4.5 4d2r:A, 3d94:A, 3f5p:A, 3f5p:B, 3f5p:C, 3f5p:D, 3f5p:E, 3f5p:F, 3f5p:G, 3f5p:H, 3f5p:I, 3f5p:J, 3f5p:K, 3f5p:M, 3f5p:L, 3f5p:R, 3f5p:S, 3f5p:T, 5fxq:A, 5fxr:A, 5hzn:A, 5hzn:B, 5hzn:C, 5hzn:D, 5hzn:E, 5hzn:F, 5hzn:G, 5hzn:H, 3i81:A, 1jqh:A, 1jqh:B, 1jqh:C, 1k3a:A, 3lvp:A, 3lvp:B, 3lvp:C, 3lvp:D, 3lw0:A, 3lw0:D, 3lw0:B, 3lw0:C, 3nw5:A, 3nw6:A, 3nw7:A, 3o23:A, 2oj9:A, 8pyi:AAA, 8pyi:BBB, 8pyi:CCC, 8pyi:DDD, 8pyi:EEE, 8pyi:FFF, 8pyi:GGG, 8pyi:HHH, 8pyj:AAA, 8pyk:AAA, 8pyl:AAA, 8pym:AAA, 8pyn:AAA, 3qqu:A, 3qqu:B, 3qqu:C, 3qqu:D, 2zm3:A, 2zm3:B, 2zm3:C, 2zm3:D
18 5f3y:A 549 192 0.0431 0.0747 0.2135 5.8
19 4bo4:C 255 54 0.0189 0.0706 0.3333 6.5 4ag3:A, 4ag3:B, 4ag3:C, 4bnt:B, 4bnt:C, 4bnt:D, 4bnu:A, 4bnu:B, 4bnu:C, 4bnu:D, 4bnv:A, 4bnv:B, 4bnv:C, 4bnv:D, 4bnx:A, 4bnx:B, 4bnx:C, 4bnx:D, 4bny:A, 4bny:B, 4bny:C, 4bny:D, 4bnz:A, 4bnz:B, 4bnz:C, 4bnz:D, 4bo0:A, 4bo0:B, 4bo0:C, 4bo0:D, 4bo1:A, 4bo1:B, 4bo1:C, 4bo1:D, 4bo2:A, 4bo2:B, 4bo2:C, 4bo2:D, 4bo3:A, 4bo3:B, 4bo3:C, 4bo3:D, 4bo4:A, 4bo4:B, 4bo4:D, 4bo5:A, 4bo5:B, 4bo5:C, 4bo5:D, 4bo6:A, 4bo6:B, 4bo6:C, 4bo6:D, 4bo7:A, 4bo7:B, 4bo7:C, 4bo7:D, 4bo8:A, 4bo8:B, 4bo8:C, 4bo8:D, 4bo9:A, 4bo9:B, 4bo9:C, 4bo9:D
20 1vli:A 358 66 0.0189 0.0503 0.2727 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218