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BioLiP
>protein
CQEANYGALLRELCLTQFQVDMEAVGETLWCDWGRTIRSYRELADCTWHMAEKLGCFWPNAEVDRFFLAVHGRYFRSCPI
SGRA

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6zho:A 577 83 0.9881 0.1438 1.0000 4.38e-60 8ax5:A, 8ax6:A, 8ax7:A, 6d1u:A, 6d1u:B, 6d1u:C, 3n7r:A, 3n7r:C, 3n7r:D, 3n7r:B, 3n7s:A, 3n7s:C, 3n7s:D, 3n7s:B, 7p0f:A, 7p0i:A, 4rwg:A, 4rwg:B, 4rwg:C, 5v6y:A, 5v6y:B, 5v6y:C, 5v6y:D, 6zis:A
2 4rwf:A 555 69 0.2500 0.0378 0.3043 1.20e-08 6v2e:A, 2xvt:C, 2xvt:F
3 6skz:A 2638 42 0.2143 0.0068 0.4286 0.072 6sl0:A, 6sl0:B
4 6sl1:A 2652 42 0.2143 0.0068 0.4286 0.072 6sky:A, 6sky:B
5 8a0c:A 1116 32 0.1190 0.0090 0.3125 0.75 8a0c:B, 8a0m:A, 8a0m:C
6 2gm8:A 217 77 0.2857 0.1106 0.3117 1.4 2gm8:B, 2gm8:C, 2gm8:D
7 6wt7:A 331 30 0.1190 0.0302 0.3333 2.3
8 1uwy:A 393 49 0.1667 0.0356 0.2857 4.8
9 8olx:B 836 24 0.1310 0.0132 0.4583 5.2 8om5:B, 8om9:B
10 3thw:B 860 24 0.1310 0.0128 0.4583 5.2 8oma:B, 8omo:B, 8omq:B, 3thx:B, 3thy:B, 3thz:B
11 8ctr:A 298 14 0.0952 0.0268 0.5714 7.4 8ctr:B, 8ctr:C, 8ctr:D
12 6tf9:UP1 569 33 0.1429 0.0211 0.3636 8.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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