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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
CPRAACQAKRGDQRCDRECNSPGCGWDGGDCSLSVGDPWRQCEALQCWRLFNNSRCDPACSSPACLYDNFDCHAGGRERT
CNPVYEKYCADHFADGRCDQGCNTEECGWDGLDCASEVPALLARGVLVLTVLLPPEELLRSSADFLQRLSAILRTSLRFR
LDAHGQAMVFPYHRPEVIGSVVMLEIDNRLCLQSPDHCFPDAQSAADYLGALSAVERLDFPYPLRDVRGEP

The query sequence (length=231) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4zlp:A 241 235 1.0000 0.9585 0.9830 1.78e-166 5czv:A, 5czx:A, 5czx:B, 6xsw:C, 6xsw:F, 6xsw:J, 6xsw:X, 4zlp:B
2 7abv:A 232 232 0.5152 0.5129 0.5129 1.05e-86 3eto:A, 3eto:B, 3i08:A, 3i08:C, 3l95:X, 3l95:Y
3 2oo4:A 226 231 0.4978 0.5088 0.4978 4.69e-71 2oo4:B
4 1pb5:A 35 32 0.0693 0.4571 0.5000 3.81e-04
5 1pb5:A 35 27 0.0476 0.3143 0.4074 4.6
6 8hgg:C 1484 24 0.0606 0.0094 0.5833 0.26 8hgg:D, 8hgh:A, 8hgh:B
7 8hgg:C 1484 31 0.0563 0.0088 0.4194 5.8 8hgg:D, 8hgh:A, 8hgh:B
8 8a7e:C 1524 24 0.0606 0.0092 0.5833 0.27 8a7d:C, 8a7e:Q, 7y5n:C, 7y5q:B
9 8a7e:C 1524 31 0.0563 0.0085 0.4194 6.1 8a7d:C, 8a7e:Q, 7y5n:C, 7y5q:B
10 4lfl:B 172 33 0.0606 0.0814 0.4242 2.1 4lfl:D, 4lfm:B, 4lfm:D, 4lfn:B, 4lfn:D
11 8oxm:A 2748 19 0.0390 0.0033 0.4737 2.9 8oxm:B
12 7sic:A 2773 19 0.0390 0.0032 0.4737 3.1 8oxo:A, 8oxo:B, 8oxp:A, 8oxp:B, 7sic:B, 7sid:A, 7sid:C
13 7ni5:A 2791 19 0.0390 0.0032 0.4737 3.1 7ni4:A, 7ni4:B, 7ni5:B, 7ni6:A, 7ni6:B, 8oxq:A, 8oxq:B
14 2fsh:A 691 67 0.0779 0.0260 0.2687 4.2 3bxz:A, 3bxz:B, 2fsg:A, 2fsi:A
15 2fsh:B 722 67 0.0779 0.0249 0.2687 6.4
16 2fsi:B 748 67 0.0779 0.0241 0.2687 6.4 2fsg:B
17 6s0k:h 838 67 0.0779 0.0215 0.2687 6.5 5k9t:A, 2vda:A
18 8a7d:Q 273 31 0.0563 0.0476 0.4194 8.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218