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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
CPAERSGHVAVSDGRHMFVWGGYKSNDFYLPREELWIYNMETGRWKKINTEGDVPPSMSGSCAVCVDRVLYLFGGHHSRG
NTNKFYMLDSRVLQWERIDCQGIPPSSKDKLGVWVYKNKLIFFGGYGYLPEDKVLGTFEFDETSFWNSSHPRGWNDHVHI
LDTETFTWSQPITTGKAPSPRAAHACATVGNRGFVFGGRYRDARMNDLHYLNLDTWEWNELIPQGICPVGRSWHSLTPVS
SDHLFLFGGFTTDKQPLSDAWTYCISKNEWIQFNHPYTEKPRLWHTACASDEGEVIVFGGCANNLLVHHRAAHSNEILIF
SVQ

The query sequence (length=323) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ebl:A 335 332 0.9969 0.9612 0.9699 0.0 6do3:A, 6do3:B, 6do4:B, 6do4:A, 6do5:B, 6do5:A, 8ebl:B, 8ebm:A, 8ebm:B, 8pif:A, 8pif:B, 8sge:A, 8sge:B, 8sgf:B, 8sgf:A, 8uxs:A, 8uxs:B
2 8bx8:C 3947 347 0.2755 0.0225 0.2565 7.56e-19 7k58:C, 7k5b:C, 7kek:C
3 8bx8:C 3947 257 0.2012 0.0165 0.2529 2.35e-13 7k58:C, 7k5b:C, 7kek:C
4 8bx8:C 3947 95 0.0898 0.0073 0.3053 3.65e-04 7k58:C, 7k5b:C, 7kek:C
5 2zwa:B 683 132 0.1146 0.0542 0.2803 1.56e-07 2zw9:A, 2zw9:B, 2zwa:A
6 6gy5:A 285 259 0.1827 0.2070 0.2278 0.001
7 2rpz:A 192 51 0.0464 0.0781 0.2941 1.6
8 4w88:B 340 105 0.0898 0.0853 0.2762 2.7 4w86:A, 4w86:B, 4w87:A, 4w87:B, 4w88:A, 4w89:A, 4w89:B
9 6s47:Bi 952 62 0.0495 0.0168 0.2581 2.7
10 6yji:A 477 90 0.0805 0.0545 0.2889 3.9 6yji:B
11 6apl:C 306 51 0.0526 0.0556 0.3333 4.4 6apl:A, 6apl:B, 6apl:D, 6apl:E, 6apl:F
12 3acl:A 288 73 0.0433 0.0486 0.1918 6.7 4ero:A, 4ewa:A, 4ewd:A, 4ewe:A, 4gul:A, 6h1h:A, 6h1i:A, 4hlt:A, 1j1l:A, 5jct:A, 6n0j:A, 6n0k:A
13 6sg9:F4 541 25 0.0310 0.0185 0.4000 7.5 6sgb:F4
14 2r66:A 456 121 0.0898 0.0636 0.2397 7.7 2r68:A
15 8d9m:A 258 40 0.0433 0.0543 0.3500 8.7 7lq5:A, 7lq5:B, 7lq5:C
16 4uur:A 124 60 0.0526 0.1371 0.2833 8.9 4uur:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218