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BioLiP
>protein
CNFNNSIKNVIVFYINEKALIEEKKMLSCYENKLLNLIKEDCENIMLKYKPNLSYICSLLKVDDTSEENIKHIKDQIIES
LENDNRPSVKLAIISLISMIVEMNGYKGKNIPMSFLIEDIALKISENSEDLINFINIKNK

The query sequence (length=140) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6tqp:A 142 140 1.0000 0.9859 1.0000 9.61e-94 6tqq:A, 6trr:A
2 4uf2:A 136 134 0.3500 0.3603 0.3657 3.23e-18 4uf1:A, 4uf3:A
3 6xy6:C 138 109 0.2786 0.2826 0.3578 1.32e-06 6xy4:A, 6xy6:A, 6xy6:E, 6xy6:G, 6xy6:I, 6xy6:K, 6xy6:M, 6xy6:O
4 2jby:A 127 137 0.2643 0.2913 0.2701 0.36
5 8ewg:A 1017 65 0.1000 0.0138 0.2154 3.5
6 8rd8:Cl 272 88 0.1500 0.0772 0.2386 8.6 8rdv:Cl, 8rdw:Cl

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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