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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
CLLPEVTEEDQGRICVVIDLDETLVHSSFKPINNADFIVPIEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAK
YADPVTDLLDRCGVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPVQSWFDDMADTELLNL
IPIFEELSGAEDVYTSLGQ

The query sequence (length=179) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2q5e:A 181 178 0.9944 0.9834 1.0000 1.14e-131 2q5e:B, 2q5e:C, 2q5e:D, 2q5e:E, 2q5e:F, 2q5e:G, 2q5e:H
2 1t9z:A 181 178 0.7654 0.7569 0.7697 6.69e-105 6du2:A, 6du2:B, 6du3:A, 6du3:B, 2ghq:A, 2ghq:B, 2ght:A, 2ght:B, 3l0b:A, 3l0c:A, 3l0c:B, 3l0y:A, 3l0y:B, 3pgl:A, 3pgl:B, 1ta0:A, 4ygy:A, 4ygy:B, 4yh1:A, 4yh1:B
3 2hhl:C 184 167 0.7933 0.7717 0.8503 3.84e-103 2hhl:A, 2hhl:D
4 8ujm:B 237 169 0.4022 0.3038 0.4260 5.34e-42 8ujm:A
5 4qqf:F 191 158 0.3184 0.2984 0.3608 1.40e-28 3qle:A
6 3ef1:A 372 108 0.1508 0.0726 0.2500 3.05e-06 3ef0:A, 4xpz:A, 4xq0:A
7 4avn:A 420 54 0.1061 0.0452 0.3519 0.28 4avo:A, 4b4f:A, 4b4f:B
8 2zu8:A 373 54 0.0838 0.0402 0.2778 0.57 2zu8:B, 2zu9:B, 2zu9:A
9 3shq:A 299 178 0.2235 0.1338 0.2247 0.81
10 2ilu:A 477 139 0.1955 0.0734 0.2518 0.87 2imp:A, 2opx:A
11 1u1h:A 746 93 0.1397 0.0335 0.2688 2.0 1u1j:A, 1u1u:A, 1u22:A
12 6h3o:F 650 74 0.1173 0.0323 0.2838 2.3 6h3g:A, 6h3g:B, 6h3g:C, 6h3g:F, 6h3g:D, 6h3g:E, 6h3g:G, 6h3g:H, 6h3o:A, 6h3o:B, 6h3o:C, 6h3o:D, 6h3o:E, 6h3o:G, 6h3o:H, 8il5:A
13 3o8o:E 752 24 0.0615 0.0146 0.4583 3.6 3o8o:A, 3o8o:C, 3o8o:G
14 2lcq:A 161 74 0.1341 0.1491 0.3243 5.6
15 6a30:A 527 98 0.1397 0.0474 0.2551 6.1
16 5ave:A 252 70 0.1173 0.0833 0.3000 7.9 5avf:A, 5avf:B, 3c8c:A, 3c8c:B, 6iov:A, 6iov:B
17 2y3a:A 976 48 0.0894 0.0164 0.3333 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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