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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
CLHERQRYRGLFAALAQTPSEEIAIVRSLSVPLVKTTPVSLPFCLDQTVADNCLTLSGMGYYLGIGGCCPACNAGATSRE
ALILAFVQQINTIFEHRAFLASLVVLADRHNAPLQDLLAGILGQPELFFVHTILRGGGACDPRLLFYPDPTYGGHMLYVI
FPGTSAHLHYLLIDRMLTACPGYRFVAHVWQSTFVLVVRRNAEKPTDAEIPTVSAADIYCKMRDISFDGGLMLEYQRLYA
TFDEFPPP

The query sequence (length=248) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8g6d:B 253 253 1.0000 0.9802 0.9802 0.0 8g6d:D, 8g6d:F, 8g6d:H, 8g6d:J, 8g6d:L, 4zxs:B, 4zxs:D
2 7pab:A 415 241 0.5685 0.3398 0.5851 1.54e-95 7pab:C
3 4z3u:B 252 250 0.5605 0.5516 0.5560 5.29e-83 5e8c:A, 5fki:1A, 5fki:1C, 5fki:1E, 5fki:1G, 5fki:1I, 5fki:1K, 5fki:1M, 5fki:1O, 5fki:1Q, 5fki:1S, 5fki:1U, 5fki:1W, 5fki:1Y, 5fki:10, 5fki:12, 5fki:14, 5fki:16, 5fki:18, 5fki:2A, 5fki:2C, 5fki:2E, 5fki:2G, 5fki:2I, 5fki:2K, 5fki:2M, 5fki:2O, 5fki:2Q, 5fki:2S, 5fki:2U, 5fki:2W, 5fki:2Y, 5fki:20, 5fki:22, 5fki:24, 5fki:26, 5fki:28, 5fki:3A, 5fki:3C, 5fki:3E, 5fki:3G, 5fki:3I, 5fki:3K, 4z3u:D
4 7t7i:D 242 169 0.1573 0.1612 0.2308 0.011 7t7i:B, 7t7i:H, 7t7i:J
5 7t7i:F 208 164 0.1613 0.1923 0.2439 0.032
6 7kya:A 1174 61 0.0766 0.0162 0.3115 0.87 7ky5:A, 7ky7:A, 7ky8:A, 7ky9:A
7 5ah5:A 789 31 0.0565 0.0177 0.4516 3.8 5ah5:B
8 3rwk:X 493 64 0.0927 0.0467 0.3594 4.0 3sc7:X
9 3v76:A 390 60 0.0685 0.0436 0.2833 5.8
10 2ex8:A 456 65 0.0726 0.0395 0.2769 6.3 2ex6:A, 2ex9:A, 2exa:A, 2exb:A
11 4yuu:V1 129 18 0.0363 0.0698 0.5000 7.6 4yuu:v1, 4yuu:V2, 4yuu:v2
12 8j6n:A 390 24 0.0444 0.0282 0.4583 8.7 8j6n:D, 8j6n:B, 8j6n:C, 8j6n:E, 8j6n:H, 8j6n:J, 8j6n:K, 8j6n:F, 8j6n:G, 8j6n:I, 8j6n:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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