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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
CLAEGTRIFDPVTGTTHRIEDVVDGRKPIHVVAAAKDGTLHARPVVSWFDQGTRDVIGLRIAGGAIVWATPDHKVLTEYG
WRAAGELRKGDRVAVRDVETGELRYSVIREVLPTRRARTYDLEVEELHTLVAEGVVVHN

The query sequence (length=139) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2imz:A 144 144 0.9424 0.9097 0.9097 8.65e-88 5i0a:A, 3ifj:A, 3ifj:B, 3igd:A, 2imz:B, 5k08:A
2 5ol7:A 143 56 0.1223 0.1189 0.3036 7.33e-06
3 1zde:A 160 47 0.0935 0.0813 0.2766 0.007
4 4gdp:B 502 50 0.1295 0.0359 0.3600 2.5 3bi2:A, 3bi2:B, 3bi4:A, 3bi4:B, 3bi5:A, 3bi5:B, 3bnm:B, 3bnm:A, 3bnu:B, 3bnu:A, 3cn8:B, 3cn8:A, 3cnd:B, 3cnd:A, 3cnp:B, 3cnp:A, 3cns:A, 3cns:B, 3cnt:B, 3cnt:A, 4ech:A, 4ech:B, 4gdp:A, 4gdp:C, 4gdp:D, 1rsg:B, 1xpq:A, 1xpq:B, 1xpq:C, 1xpq:D, 1yy5:A, 1yy5:B, 1z6l:A, 1z6l:B
5 6z5s:W 94 29 0.0863 0.1277 0.4138 4.5
6 1anw:A 319 29 0.0719 0.0313 0.3448 7.9 1a8a:A, 1a8b:A, 1anw:B, 1anx:A, 1anx:B, 1anx:C, 1avh:A, 1avh:B, 1avr:A, 1bc0:A, 1bc1:A, 1bc3:A, 1bcw:A, 1bcy:A, 1bcz:A, 1g5n:A, 8gyc:B, 8h0j:A, 8h9z:A, 1hak:B, 1hak:A, 1hvd:A, 1hve:A, 1hvf:A, 6k22:A, 1sav:A, 2xo2:A, 2xo3:A
7 3qw4:C 447 49 0.1367 0.0425 0.3878 8.1 3qw4:B
8 5dhm:C 268 38 0.0935 0.0485 0.3421 9.6 5dhm:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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