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BioLiP
>protein
CLAEGTRIFDPVTGTTHRIEDVVDGRKPIHVVAAAKDGTLHARPVVSWFDQGTRDVIGLRIAGGAILWATPDHKVLTEYG
WRAAGELRKGDRVAVRDVETGELRYSVIREVLPTRRARTFDLEVEELHTLVAEGVVVHACSP

The query sequence (length=142) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2imz:A 144 143 0.9296 0.9167 0.9231 1.81e-87 5i0a:A, 3ifj:A, 3ifj:B, 3igd:A, 2imz:B, 5k08:A
2 5ol7:A 143 59 0.1268 0.1259 0.3051 1.04e-05
3 1zde:A 160 121 0.1972 0.1750 0.2314 6.82e-04
4 4gdp:B 502 50 0.1268 0.0359 0.3600 2.6 3bi2:A, 3bi2:B, 3bi4:A, 3bi4:B, 3bi5:A, 3bi5:B, 3bnm:B, 3bnm:A, 3bnu:B, 3bnu:A, 3cn8:B, 3cn8:A, 3cnd:B, 3cnd:A, 3cnp:B, 3cnp:A, 3cns:A, 3cns:B, 3cnt:B, 3cnt:A, 4ech:A, 4ech:B, 4gdp:A, 4gdp:C, 4gdp:D, 1rsg:B, 1xpq:A, 1xpq:B, 1xpq:C, 1xpq:D, 1yy5:A, 1yy5:B, 1z6l:A, 1z6l:B
5 6z5s:W 94 29 0.0845 0.1277 0.4138 5.1
6 8r2c:A 169 43 0.0986 0.0828 0.3256 5.9
7 7ojl:L 1498 66 0.1338 0.0127 0.2879 6.2
8 7ojk:L 1843 66 0.1338 0.0103 0.2879 6.3
9 7ojn:L 2010 66 0.1338 0.0095 0.2879 6.3 5j1n:A, 5j1p:A, 4miw:A, 7oe7:L
10 3qw4:C 447 49 0.1338 0.0425 0.3878 8.0 3qw4:B
11 7ef9:A 414 30 0.0704 0.0242 0.3333 9.9 7ef8:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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