Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
CIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK

The query sequence (length=72) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1a56:A 81 72 1.0000 0.8889 1.0000 9.04e-48 1a8c:A, 4jcg:A, 3zow:A, 3zow:B, 3zow:C, 3zow:D, 3zow:E, 3zow:F, 3zow:G, 3zow:H, 3zow:I, 3zow:J, 3zow:K, 3zow:L, 3zow:M, 3zow:N, 3zow:O, 3zow:P, 3zow:Q, 3zow:R, 3zox:A, 3zox:B, 3zox:C, 3zox:D, 3zoy:A, 3zoy:B, 3zoy:C, 3zoy:D
2 5xec:A 82 72 0.6389 0.5610 0.6389 9.24e-29 5xed:A
3 1cor:A 82 72 0.6111 0.5366 0.6111 2.15e-26 6kq1:A, 6kq1:B
4 5aur:A 83 75 0.6250 0.5422 0.6000 1.56e-25 2ai5:A, 5aur:C, 5aur:E, 5aur:G, 5aus:A, 5aus:C, 1ayg:A, 3vym:A, 1ynr:A, 1ynr:B, 1ynr:C, 1ynr:D, 4zid:A
5 351c:A 82 72 0.5833 0.5122 0.5833 5.17e-25 451c:A, 1dvv:A, 2exv:A, 2exv:C, 2pac:A, 3x39:A, 3x39:B
6 1cch:A 82 72 0.6111 0.5366 0.6111 1.10e-24 1fi3:A, 2i8f:A
7 5xec:C 80 72 0.5694 0.5125 0.5694 4.90e-24 5xed:C
8 2d0s:A 79 72 0.4722 0.4304 0.4722 8.31e-21
9 3x15:A 87 79 0.4306 0.3563 0.3924 2.50e-08 3x15:G, 3x15:D, 3x15:J, 2zxy:A
10 4xxl:A 92 75 0.3611 0.2826 0.3467 1.08e-06
11 4xyd:B 145 74 0.2917 0.1448 0.2838 1.15e-04
12 3cp5:A 116 22 0.1250 0.0776 0.4091 0.004 6cuk:A, 6cun:A
13 5z25:A 96 28 0.1944 0.1458 0.5000 0.004
14 5z25:A 96 26 0.1667 0.1250 0.4615 7.7
15 1fj0:A 114 73 0.3056 0.1930 0.3014 0.030 1fj0:B, 1fj0:C, 1fj0:D, 1hh7:A, 1i8o:A, 1i8p:A, 1i8p:B, 1i8p:C, 1i8p:D
16 8hev:H 417 29 0.1944 0.0336 0.4828 0.18 8hev:A, 8hev:B, 8hev:C, 8hev:U, 8hev:G, 8hev:J, 8hev:L, 8hev:V, 8hev:I, 8hev:K, 8hev:M
17 1h31:B 138 32 0.1806 0.0942 0.4062 0.19 1h31:D, 1h31:F, 1h31:H, 1h32:B, 1h33:B, 2oz1:B, 2oz1:D, 2oz1:F, 2oz1:H
18 8gyg:B 305 37 0.2222 0.0525 0.4324 0.33 8gyg:A
19 1qn2:A 99 19 0.1389 0.1010 0.5263 0.74 1qn2:B, 1qn2:C
20 5znj:A 563 47 0.1528 0.0195 0.2340 1.3 5znk:A
21 1kop:A 223 22 0.1389 0.0448 0.4545 5.5 8dpc:A, 8dpc:C, 8dpc:E, 8dpc:G, 8dpo:A, 8dpo:C, 8dpo:E, 8dpo:G, 8dqf:A, 8dqf:C, 8dqf:E, 8dqf:G, 8dr2:A, 8dr2:C, 8dr2:E, 8dr2:G, 8drb:A, 8drb:C, 8drb:E, 8drb:G, 8dyq:A, 8dyq:C, 8dyq:E, 8dyq:G, 1kop:B, 1koq:A, 1koq:B
22 3uwc:A 371 55 0.2917 0.0566 0.3818 6.1
23 2exg:A 101 36 0.1806 0.1287 0.3611 8.5 2ain:A, 7qcr:B, 7qcr:A
24 6q09:A 162 19 0.1111 0.0494 0.4211 8.8 6tyj:A
25 4jjj:A 636 25 0.1389 0.0157 0.4000 9.2
26 1hro:A 105 42 0.1667 0.1143 0.2857 9.9 1hro:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218