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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
CHWADTELNRRRRRFCSKVEGYGSVCSCKDPTPIEFSPDPLPDNKVLNVPVAVIAGNRPNYLYRMLRSLLSAQGVSPQMI
TVFIDGYYEEPMDVVALFGLRGIQHTPISIKNARVSQHYKASLTATFNLFPEAKFAVVLEEDLDIAVDFFSFLSQSIHLL
EEDDSLYCISAWNDQGYEHTAEDPALLYRVETMPGLGWVLRRSLYKEELEPKWPTPEKLWDWDMWMRMPEQRRGRECIIP
DVSRSYHFGIVGLNMNGYFHEAYFKKHKFNTVPGVQLRNVDSLKKEAYEVEVHRLLSEAEVLDHSKNPCEDSFLPDTEGH
TYVAFIRMEKDDDFTTWTQLAKCLHIWDLDVRGNHRGLWRLFRKKNHFLVVGVPASPYSVKKPPSVTPIFLEPP

The query sequence (length=394) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5ggi:B 551 394 1.0000 0.7151 1.0000 0.0 5ggi:A, 5ggj:A, 5ggj:B, 5ggk:A, 5ggk:B, 5ggl:A, 5ggl:B, 5ggn:A, 5ggn:B, 5ggo:A, 5ggo:B, 5ggp:A, 5ggp:B, 5xfc:A, 5xfc:B
2 2am3:A 342 259 0.2411 0.2778 0.3668 2.94e-33 2am4:A, 2am5:A, 2apc:A, 1foa:A
3 7y42:A 968 38 0.0431 0.0176 0.4474 0.45 7y42:B, 7y42:D
4 6yo9:A 398 77 0.0508 0.0503 0.2597 0.49 6twk:A, 6twk:B, 6yo9:B
5 8kgb:C 245 156 0.0914 0.1469 0.2308 0.91 8kgb:A, 8kgb:B, 8kgb:D, 8x35:A, 8x35:B, 8x36:A, 8x36:B, 8x37:A, 8x37:B
6 6idv:A 425 48 0.0406 0.0376 0.3333 1.6 6idv:B
7 7p9q:A 454 54 0.0431 0.0374 0.3148 2.3 7p9q:B, 7p9q:C, 7p9q:D, 7p9q:E, 7p9q:F
8 8h3m:C 930 40 0.0431 0.0183 0.4250 4.8
9 5vcs:B 323 58 0.0431 0.0526 0.2931 5.0
10 7tei:B 1042 40 0.0431 0.0163 0.4250 5.0
11 7q9f:A 1009 40 0.0431 0.0168 0.4250 5.8 7akd:C, 7l56:B, 7l56:C, 7l56:A, 7q9f:B
12 7wuh:E 1044 40 0.0431 0.0163 0.4250 5.9 7wuh:A, 7xu3:B, 7xu3:A, 7xu3:C, 6zb5:A, 6zb5:C, 6zb5:B
13 5vcm:B 358 58 0.0431 0.0475 0.2931 6.1 5vcm:A, 5vcs:A
14 7d56:C 640 52 0.0406 0.0250 0.3077 6.2 7d56:B, 7d56:A, 7d5r:A, 7d5r:B, 7d8n:A, 7d8n:B, 7dan:C, 7dan:B, 7dan:A
15 7od3:A 1012 40 0.0431 0.0168 0.4250 6.2 7od3:B, 7od3:C
16 7elb:A 1937 48 0.0381 0.0077 0.3125 6.3 7ckm:A, 7elb:C, 6kld:A, 6kle:A, 6klh:A, 6klh:C
17 8bon:B 1070 40 0.0431 0.0159 0.4250 6.5 8bon:A, 8bon:C, 7nd7:A, 7nd7:B, 7nd7:C, 8xut:B, 8xut:A
18 7el9:A 1731 48 0.0381 0.0087 0.3125 6.5 7el9:D, 7elc:A
19 4rkm:B 660 106 0.0736 0.0439 0.2736 6.7 4rkm:A, 4rkm:I, 4rkm:C, 4rkm:D, 4rkm:K, 4rkm:E, 4rkm:F, 4rkm:H, 4rkm:L, 4rkm:J, 4rkm:G, 4rkn:A, 4rkn:C, 4rkn:B, 4rkn:D
20 8cya:A 1100 40 0.0431 0.0155 0.4250 6.7 7nt9:A, 7nt9:B, 7nt9:C, 7nta:B, 7nta:C, 7nta:A, 7ntc:A, 7ntc:B, 8p9y:C
21 7jji:A 1109 40 0.0431 0.0153 0.4250 6.9 8aaa:A, 7b62:A, 7beh:E, 7bem:E, 8bec:B, 8bec:D, 7d2z:B, 7d30:B, 7dwy:A, 7dwy:B, 7dwy:C, 7e7b:A, 7e7b:B, 7e7b:C, 7f5g:C, 8j1q:C, 8j26:C, 7jji:C, 7jji:B, 7kmh:C, 7l2c:B, 7l4z:B, 7l4z:D, 7l4z:A, 7l4z:C, 7l4z:E, 7ldj:A, 7ly3:A, 7ly3:B, 7q0i:D, 8qh0:A, 7qur:A, 7qur:B, 7qur:C, 7qus:A, 7qus:B, 7qus:C, 7r6w:R, 7sn0:C, 7wd8:B, 7wgv:A, 7wgv:B, 7wgv:C, 7wk8:A, 7x08:A, 7x08:B, 7x08:C, 7x2l:E, 7x93:G, 7xtz:A, 7xtz:C, 7xtz:B, 7xu0:C, 7xu0:B, 7xu1:A, 7xu6:A, 7xu6:C, 7xu6:B, 7xwa:D, 7y0c:E, 7y0c:R, 7yck:A, 7z8o:A, 7zbu:A, 6zp2:A, 6zp2:C, 6zp2:B
22 8hlc:A 1081 40 0.0431 0.0157 0.4250 7.1 7e7d:A, 7e7d:B, 7e7d:C, 8h3e:A, 8h3e:B, 8h3e:C, 8hlc:B, 8hlc:C, 7odl:A, 7odl:B, 7odl:C, 7wgx:A, 7wgx:B, 7wgx:C, 6zb4:C, 6zb4:B, 6zb4:A, 6zoz:A, 6zoz:B, 6zoz:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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