Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
CHRCGSDNVRKMVDSPVGDAWEVYVCEKCCYSWRSTENPVVMEKFKLDDNKIANMGVI

The query sequence (length=58) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ae4:a 67 58 1.0000 0.8657 1.0000 3.51e-39 7ae4:b, 7ae4:c, 7ae4:d, 7ae4:e, 7ae4:f, 7ae5:b, 7ae5:c, 7ae5:d, 7ae5:e, 7ae5:f, 7ae5:a, 7ae7:a, 7ae7:c, 7ae7:d, 7ae7:e, 7ae7:f
2 8bjd:A 208 25 0.1724 0.0481 0.4000 0.45 8bje:A, 8bk5:A, 2vcd:A
3 6cnb:B 1114 41 0.2759 0.0144 0.3902 0.63 8bws:B, 6cnc:B, 6cnd:B, 6cnf:B, 6eu0:B, 6eu1:B, 6f40:B, 6f41:B, 6f42:B, 6f44:B, 5fj8:B, 5fja:B, 6tut:B, 7z0h:B, 7z1l:B, 7z1m:B, 7z1n:B, 7z1o:B, 7z2z:B, 7z30:B, 7z31:B
4 3cng:C 178 29 0.1724 0.0562 0.3448 0.91 3cng:A, 3cng:B, 3cng:D
5 6vfr:A 428 24 0.1724 0.0234 0.4167 1.7 6vfr:B
6 3sur:A 504 24 0.1552 0.0179 0.3750 2.9 3sus:A, 3sut:A, 3suu:A, 3suv:A, 3suw:A
7 7xw9:R 288 50 0.2586 0.0521 0.3000 2.9 7wkd:R, 7x1t:A, 7x1u:A
8 7pt6:9 341 35 0.2241 0.0381 0.3714 3.9 7pt6:I, 7pt7:9
9 5j55:A 480 20 0.1552 0.0187 0.4500 4.7 5j53:A, 5j54:A, 7qr6:A, 7qr6:B, 7qr6:C
10 8shj:A 334 29 0.1552 0.0269 0.3103 4.8 8shj:B, 8t55:A, 8t55:B
11 6xm7:A 488 15 0.1379 0.0164 0.5333 5.2 6xm6:A, 6xm8:A, 6xm9:A, 6xma:A
12 6j0x:B 466 31 0.2414 0.0300 0.4516 5.6 6j0w:A, 6j0w:B, 6j0x:A, 6j0x:C, 6j0x:D
13 5oh7:C 82 46 0.1552 0.1098 0.1957 5.7
14 8shj:C 306 29 0.1552 0.0294 0.3103 5.8 8t55:C
15 1qyp:A 57 40 0.2414 0.2456 0.3500 7.3
16 8jd6:R 774 15 0.1379 0.0103 0.5333 9.5 7e9h:R, 7e9h:S, 8jd4:4, 8jd5:4, 8jd6:S

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218