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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
CGRVRDFVAKLANNTHQHVFDDLRGSVSLSWVGDSTGVILVLTTFHVGQSKLYRSEDYGKNFKDITDLINNTFIRTEFGM
AIGPENSGKVVLTAEVSGGSRGGRIFRSSDFAKNFVQTDLPFHPLTQMMYSPQNSDYLLALSTENGLWVSKNFGGKWEEI
HKAVCLAKWGSDNTIFFTTYANGSCKADLGALELWRTSDLGKSFKTIGVKIYSFGLGGRFLFASVMADKDTTRRIHVSTD
QGDTWSMAQLPSVGQEQFYSILAANDDMVFMHVDEPGDTGFGTIFTSDDRGIVYSKSLDRHLYTTTGGETDFTNVTSLRG
VYITSVLSEDNSIQTMITFDQGGRWTHLRKPENSECDATAKNKNECSLHIHASYSISQKLNVPMAPLSEPNAVGIVIAHG
SVGDAISVMVPDVYISDDGGYSWTKMLEGPHYYTILDSGGIIVAIEHSSRPINVIKFSTDEGQCWQTYTFTRDPIYFTGL
ASEPGARSMNISIWGFTESTSQWVSYTIDFKDILERNCEEKDYTIWLAHSTDPEDYEDGCILGYKEQFLRLRKSSMCQNG
RDYVVTKQPSICLCSLEDFLCDFGYYRPENDSKCVEQPELKGHDLEFCLYGREEHLTTNGYRKIPGDKCQGGVNPVREVK
DLKKKCTSNFLSPE

The query sequence (length=654) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8t8s:B 664 663 0.9985 0.9834 0.9849 0.0 3f6k:A, 5mrh:A, 5mri:A, 4msl:A, 4n7e:A, 5nmr:A, 4po7:A, 8t8r:A, 8t8s:A, 6x3l:A, 6x48:A, 6x4h:A
2 3wsy:A 662 675 0.3058 0.3021 0.2963 1.32e-71 3wsz:A
3 8eti:5 340 103 0.0428 0.0824 0.2718 0.004 8eth:5, 8eup:5, 8euy:5, 8ev3:5
4 6p2o:A 727 186 0.0719 0.0646 0.2527 0.011 6p2o:B
5 5jwz:A 724 255 0.0933 0.0843 0.2392 0.075 5jwz:B
6 5jwz:A 724 67 0.0398 0.0359 0.3881 2.3 5jwz:B
7 2cn3:A 728 185 0.0719 0.0646 0.2541 0.12 2cn3:B
8 6myv:C 526 74 0.0321 0.0399 0.2838 0.46 6mrv:B, 6mrv:A, 6myv:A, 6myv:B, 6myv:D
9 6p2n:A 748 180 0.0627 0.0548 0.2278 0.56
10 1uz4:A 410 92 0.0352 0.0561 0.2500 0.77 7odj:AAA
11 6p2l:A 685 153 0.0581 0.0555 0.2484 1.3
12 8xxn:3B 536 89 0.0367 0.0448 0.2697 2.9 6zon:B, 6zp4:B, 6zvj:B
13 8pj1:1 588 91 0.0367 0.0408 0.2637 3.1 6fec:w, 2krb:A, 8oz0:I, 8pj2:1, 8pj3:1, 8pj5:1, 8pj6:1
14 7mu2:C 316 86 0.0291 0.0601 0.2209 3.6 7f69:A, 7mu2:A
15 7kn8:B 708 65 0.0260 0.0240 0.2615 4.0 7kn8:A
16 7kn8:B 708 88 0.0291 0.0268 0.2159 9.0 7kn8:A
17 8a6x:B 368 92 0.0382 0.0679 0.2717 5.6 8a3u:A, 8a52:A, 8a52:B, 8a6x:A, 8a7f:A, 8a7f:B, 8a7h:A, 8a7h:B
18 6mgj:A 747 190 0.0688 0.0602 0.2368 5.8 6mgj:B, 6mgj:C, 6mgj:D, 6mgj:E, 6mgj:F, 6mgj:G, 6mgj:H, 6mgk:A, 6mgk:B, 6mgk:C, 6mgk:D, 6mgl:A
19 5fks:A 731 68 0.0275 0.0246 0.2647 6.7
20 4gcz:B 378 92 0.0382 0.0661 0.2717 8.1 4gcz:A
21 1x87:A 495 99 0.0428 0.0566 0.2828 8.8 1x87:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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