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BioLiP
>protein
CGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEPPKCLHPCVISREIMENYNIALRWTAKQK
LYSRTGESVEFTLRTTCWDGKLEY

The query sequence (length=104) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4ont:D 126 117 1.0000 0.8254 0.8889 2.70e-72 4ont:F, 4ont:E, 4zh1:D, 4zh1:E, 4zh1:F
2 7aoe:B 1174 80 0.2019 0.0179 0.2625 0.039 7aoc:B, 7aod:B, 7aod:N
3 7mwz:D 301 48 0.1635 0.0565 0.3542 0.26
4 4wqm:A 326 59 0.1827 0.0583 0.3220 0.55
5 6pdu:L 219 83 0.1827 0.0868 0.2289 2.6 6vbo:L
6 2xwb:F 714 52 0.1731 0.0252 0.3462 2.6 3hrz:D, 3hs0:D, 3hs0:I, 7jtn:A, 7jtn:C, 7jtq:A, 7jtq:C, 7noz:F, 2ok5:A, 1q0p:A, 6qsw:AAA, 6qsw:BBB, 6qsw:CCC, 6qsx:AAA, 6qsx:BBB, 6rav:AAA, 6rav:BBB, 1rrk:A, 1rs0:A, 1rtk:A, 6rur:L, 6rur:J, 6ruv:J, 6ruv:L, 6t8u:AAA, 6t8u:BBB, 6t8u:CCC, 6t8v:AAA, 6t8v:BBB, 6t8w:AAA, 6t8w:BBB, 2win:I, 2win:J, 2win:K, 2win:L, 2xwb:H
7 2xwb:F 714 34 0.1346 0.0196 0.4118 6.9 3hrz:D, 3hs0:D, 3hs0:I, 7jtn:A, 7jtn:C, 7jtq:A, 7jtq:C, 7noz:F, 2ok5:A, 1q0p:A, 6qsw:AAA, 6qsw:BBB, 6qsw:CCC, 6qsx:AAA, 6qsx:BBB, 6rav:AAA, 6rav:BBB, 1rrk:A, 1rs0:A, 1rtk:A, 6rur:L, 6rur:J, 6ruv:J, 6ruv:L, 6t8u:AAA, 6t8u:BBB, 6t8u:CCC, 6t8v:AAA, 6t8v:BBB, 6t8w:AAA, 6t8w:BBB, 2win:I, 2win:J, 2win:K, 2win:L, 2xwb:H
8 2uwn:A 187 53 0.1731 0.0963 0.3396 3.1 2v8e:A, 7zjm:B
9 2jrp:A 81 27 0.1058 0.1358 0.4074 3.2
10 3mse:B 168 33 0.1058 0.0655 0.3333 3.8
11 7zlk:R 112 83 0.1923 0.1786 0.2410 4.8
12 5f7j:B 291 30 0.1058 0.0378 0.3667 5.7 5f76:A, 5f76:B, 5f76:C, 5f77:A, 5f77:B, 5f77:C, 5f7j:A, 5f7j:D, 5f7j:E, 5f7o:A, 5f7o:B, 5f7x:A, 5f7x:B, 5f7x:C, 5fak:A, 5fak:B, 5fak:D, 5fak:E, 4l5a:A, 4l5a:C, 4l5a:B, 4l5a:D, 4l5a:E, 4l5a:F, 4l5c:A, 4l5c:B, 4l5c:C, 4l5c:D, 4l5c:E, 4l5c:F, 4l6i:A, 4l6i:B, 4l6i:D, 4l6i:E
13 8a7d:Q 273 114 0.2404 0.0916 0.2193 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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