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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
CFSQKVTSITKPILVNAIHSLFSEYFHREKVLNVADLGCAAGPNPFSVILTVKESLERKCKELNCQPAELQVYLNDLPGN
DFNSLFKDLSGLRTCFVMGAPGSFYGRLFPRSCLHLVHSCYSVHWLSQVPKGLTSKEGLPLNKGKINISKTSPPVVEAAY
LAQFKEDFTLLLKSRAEEMVQNGRMVLILNGRQASDPWGKESCYHWEVLAEAISEMVSQGLVDEEKLDSFNVPCYAPSQE
EVQDIVDKVGSFAVEHIETFTLPFANDQESDTRVKGEQLAKNIRSFTESIISYEFGKEITEKVYHKLTQIVVKDMASRPP
TNTTVVVVLSRTM

The query sequence (length=333) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8t2g:A 333 333 1.0000 1.0000 1.0000 0.0 8t2g:B, 8uzd:A, 8uzd:B
2 6lyh:A 358 337 0.5976 0.5559 0.5905 7.10e-148 6lyh:B, 6lyh:C, 6lyh:D, 6lyh:E, 6lyh:F, 6lyh:G, 6lyh:H
3 1m6e:X 359 340 0.4144 0.3844 0.4059 3.01e-84
4 2efj:A 348 340 0.3664 0.3506 0.3588 4.81e-67
5 2eg5:E 346 332 0.3754 0.3613 0.3765 7.94e-66 2eg5:A, 2eg5:C, 2eg5:G
6 6c8r:A 358 316 0.3213 0.2989 0.3386 1.71e-59 6c8r:B, 6c8s:A, 6c8s:B
7 3b5i:A 344 290 0.2823 0.2733 0.3241 3.73e-54 3b5i:B
8 5f2k:A 358 238 0.1682 0.1564 0.2353 7.00e-13 5f2k:B, 5f2n:A, 5f2n:B, 5f2o:A, 5f2o:B
9 6wlw:U 205 129 0.1021 0.1659 0.2636 0.58 6wm2:U
10 3ojf:A 257 141 0.1111 0.1440 0.2624 0.73 3ojf:D, 3ojf:B, 3ojf:C, 2qio:A, 2qio:B, 2qio:C, 2qio:D, 5ycr:A, 5ycr:B, 5ycr:C, 5ycr:D, 5ycs:A, 5ycs:B, 5ycs:C, 5ycs:D
11 2vbc:A 600 78 0.0661 0.0367 0.2821 2.5 2jlr:A, 2jls:A, 2jlu:A, 2jlu:B, 2jlv:A, 2jlv:B, 2jlw:A, 2jlw:B, 2jlx:A, 2jlx:B, 2jly:A, 2jly:B, 2jlz:A, 2jlz:B, 2whx:A, 2wzq:A, 5xc6:A, 5xc6:B, 5yvj:B
12 5c5j:F 342 74 0.0541 0.0526 0.2432 4.0 5c5j:A, 6ig1:F, 6ig1:A, 4ir1:F, 4ir1:A, 4ir9:F, 4ir9:A, 4irc:F, 4irc:A, 4ird:F, 4ird:A, 4irk:B, 4irk:A, 6jup:F, 6jup:A, 6juq:F, 6juq:A, 4q43:A, 4q43:F, 4q44:A, 4q44:F, 4q45:F, 4q45:A, 4r8u:A, 4r8u:B, 5yur:F, 5yur:A, 5yus:F, 5yus:A, 5yut:F, 5yut:A, 5yuu:F, 5yuu:A, 5yuv:F, 5yuv:A, 5yuw:A, 5yuw:F, 5yux:F, 5yux:A, 5yuy:F, 5yuy:A, 5yuz:F, 5yuz:A, 5yv0:F, 5yv0:A, 5yv1:F, 5yv1:A, 5yv2:F, 5yv2:A, 5yv3:F, 5yv3:A, 5yyd:F, 5yyd:A, 5yye:F, 5yye:A, 5zlv:F, 5zlv:A
13 6wcd:A 314 27 0.0390 0.0414 0.4815 5.1
14 1f0p:A 284 128 0.0991 0.1162 0.2578 5.5
15 8ix9:C 314 65 0.0631 0.0669 0.3231 7.0 8ix9:B, 8ix9:A, 8ixh:A, 8ixh:B, 8ixh:C, 8ixm:A, 8ixm:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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