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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
CFHPPYNNFQPDRRAVKRVGVDTGGGTVGLVASIYRDSKRKIIRDLQKQDIQYVEYGDTRTLIIPTDKYFMFSSPRLNEI
CYPGLNNVIRLLNFYPQSTIYVAGFTDNVGSRSHKRKLSQAQAETMMTFLWANGIAAKRLKAEGYGDKNAISDNAIIHGS
AQNRRIEIQWFTS

The query sequence (length=173) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7muc:BL 173 173 1.0000 1.0000 1.0000 7.48e-131 7muc:CL, 7muc:EL, 7muc:FL, 7muc:GL, 7muc:HL, 7muc:IL, 7muc:JL, 7muc:KL, 7muc:LL, 7muc:AL, 7mud:BL, 7mud:CL, 7mud:DL, 7mud:EL, 7mud:FL, 7mud:GL, 7mud:HL, 7mud:IL, 7mud:JL, 7mud:KL, 7mud:LL, 7mud:ML, 7mud:AL, 7muq:HL, 7muq:IL, 7muq:JL, 7muq:KL, 7muq:LL, 7muq:ML, 7muq:AL, 7muq:BL, 7muq:CL, 7muq:DL, 7muq:EL, 7muq:FL, 7muq:GL, 7mus:HL, 7mus:IL, 7mus:JL, 7mus:KL, 7mus:LL, 7mus:ML, 7mus:AL, 7mus:BL, 7mus:CL, 7mus:DL, 7mus:EL, 7mus:FL, 7mus:GL, 7muv:FL, 7muv:GL, 7muv:HL, 7muv:IL, 7muv:JL, 7muv:KL, 7muv:LL, 7muv:ML, 7muv:AL, 7muv:BL, 7muv:CL, 7muv:DL, 7muv:EL, 7muw:FL, 7muw:GL, 7muw:HL, 7muw:IL, 7muw:JL, 7muw:KL, 7muw:LL, 7muw:ML, 7muw:AL, 7muw:BL, 7muw:CL, 7muw:DL, 7muw:EL, 7muy:FL, 7muy:GL, 7muy:HL, 7muy:IL, 7muy:JL, 7muy:KL, 7muy:LL, 7muy:ML, 7muy:AL, 7muy:BL, 7muy:CL, 7muy:DL, 7muy:EL
2 5u1h:C 123 107 0.1965 0.2764 0.3178 8.41e-15 5u1h:A, 5u1h:B, 5u1h:D
3 5wtl:C 260 87 0.1792 0.1192 0.3563 2.02e-12 5wtl:A, 5wtl:B, 5wtl:D
4 7muq:GK 151 130 0.1965 0.2252 0.2615 3.20e-12 7muq:LK, 7muq:MK, 7muq:BK, 7muq:DK, 7mus:GK, 7mus:HK, 7mus:IK, 7mus:JK, 7mus:LK, 7mus:AK, 7muv:EK, 7muv:FK, 7muv:HK, 7muv:IK, 7muv:MK, 7muv:BK, 7muw:EK, 7muw:GK, 7muw:JK, 7muw:KK, 7muw:LK, 7muw:MK, 7muw:BK, 7muy:FK, 7muy:GK, 7muy:IK, 7muy:AK, 7muy:BK
5 4rha:A 131 120 0.1850 0.2443 0.2667 2.52e-11 4rha:B, 5ves:B
6 4g88:D 123 85 0.1676 0.2358 0.3412 1.19e-08 4g4y:A, 4g4y:B, 4g4y:C, 4g4y:D, 4g4y:E, 4g4y:F, 4g4y:G, 4g4y:H, 4g4z:A, 4g4z:B, 4g4z:C, 4g4z:D, 4g4z:E, 4g4z:F, 4g4z:G, 4g4z:H, 4g88:A, 4g88:B, 4g88:C, 4g88:E, 4g88:F, 4g88:G, 4g88:H, 3td3:A, 3td3:B, 3td3:C, 3td3:D, 3td3:E, 3td3:F, 3td3:G, 3td3:H, 3td4:A, 3td4:B, 3td4:C, 3td4:D, 3td4:E, 3td4:F, 3td4:G, 3td4:H, 3td5:A, 3td5:B, 3td5:C, 3td5:D, 3td5:E, 3td5:F, 3td5:G, 3td5:H
7 7rjj:A 120 74 0.1503 0.2167 0.3514 2.40e-06 7rjj:B
8 4g4v:A 111 102 0.1445 0.2252 0.2451 1.23e-05 4g4w:A, 4g4x:A
9 6top:A 154 78 0.1329 0.1494 0.2949 2.99e-05 6top:B, 6top:C, 6top:D
10 5lkw:A 119 100 0.1387 0.2017 0.2400 0.001 5lkw:B, 5n2c:A, 5n2c:B, 5n2c:C
11 3cyq:D 132 78 0.1503 0.1970 0.3333 0.027 3cyq:K
12 2aiz:P 134 57 0.0983 0.1269 0.2982 0.039
13 3ojc:A 230 54 0.0983 0.0739 0.3148 0.27 3ojc:B
14 2xvz:A 263 114 0.1387 0.0913 0.2105 3.0 2xvx:A, 2xvy:A
15 6u83:A 154 120 0.1445 0.1623 0.2083 6.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218