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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
CERPPPEVVQKGYRGVAMEQNYNPRLLEASIKANLPVESLPAAAPGGPSVSDVYENVQVLKDLSVAEFTRTMVAVTTWVA
PKEGCNYCHVPGNWASDDIYTKVVSRRMFELVRATNSNWKDHVAETGVTCYTCHRGNPVPKYVWVTDPGPNQPSGVTPTG
QNYASSTVAYSALPLDPYTPFLDQSNEIRVIGQTALPAGNTTSLKQAEWTYGLMMQISDSLGVNCTFCHNSRSFYDWKQS
TPQRTTAWYAIRHVRDINQNYIWPLNDALPASRKGPYGDPFKVGCMTCHQGAYKPLYGAQMAKDYPALYES

The query sequence (length=311) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7vrj:C 313 313 0.9421 0.9361 0.9361 0.0 8wdu:C, 8wdv:C
2 5b5m:C 317 311 0.7878 0.7729 0.7878 0.0 5b5m:o, 5b5n:C, 5b5n:o, 7c52:C, 1eys:C, 4v8k:AC, 4v8k:BC, 3wmm:C, 5y5s:C
3 7c9r:C 311 311 0.6527 0.6527 0.6527 4.40e-156
4 7xxf:C 343 312 0.5209 0.4723 0.5192 5.16e-115
5 3t6d:C 334 327 0.5145 0.4790 0.4893 1.20e-99 4ac5:C, 4cas:A, 3d38:C, 1dxr:C, 6et5:C, 3g7f:C, 2i5n:C, 2jbl:C, 5m7j:A, 5m7k:A, 5m7l:A, 5nj4:C, 5o4c:C, 5o64:C, 1prc:C, 2prc:C, 3prc:C, 5prc:C, 6prc:C, 7prc:C, 7q7p:CCC, 7q7q:CCC, 1r2c:C, 3t6e:C, 1vrn:C, 2wjm:C, 2wjn:C, 2x5u:C, 2x5v:C, 6zhw:C, 6zi4:C, 6zi5:C, 6zi6:C, 6zi9:C, 6zia:C, 6zid:C
6 7o0u:C 301 312 0.4630 0.4784 0.4615 1.84e-86 7o0v:C, 7o0w:C, 7o0x:C
7 8k5o:C 346 325 0.4534 0.4075 0.4338 1.39e-79
8 8iug:C 316 268 0.2379 0.2342 0.2761 5.81e-15 8hju:C, 8hjv:C, 8iun:C, 8j5o:C, 8j5p:C, 5yq7:C
9 7o7g:A 627 85 0.0707 0.0351 0.2588 0.49 4lm8:A, 8qbq:A, 8qbz:A, 8qc9:A, 7qth:A
10 8ja7:E 443 43 0.0579 0.0406 0.4186 2.1 8ja8:A, 8ja9:A, 8jaa:A, 8jab:A, 8jac:A, 8jad:A, 7wda:A, 7wda:B, 7wda:C, 7wda:D
11 7oz8:AAA 474 57 0.0450 0.0295 0.2456 2.1
12 6qdj:A 758 105 0.0836 0.0343 0.2476 4.1
13 1odz:A 379 143 0.1061 0.0871 0.2308 8.4 1gvy:A, 1gw1:A, 1j9y:A, 1odz:B, 1r7o:A, 2whm:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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