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BioLiP
>protein
CEMKRTTLDSPLGKLELSGCEQGLHEIKLLGVPAPAAVLGGPEPLMQCTAWLNAYFHQPEAIEEFPVPALHHPVFQQESF
TRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHEGH
R

The query sequence (length=161) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1eh6:A 168 162 1.0000 0.9583 0.9938 2.27e-115 1eh7:A, 1eh8:A, 1t38:A, 1t39:A, 1t39:B, 1yfh:C, 1yfh:A, 1yfh:B
2 3kzy:A 162 161 0.8571 0.8519 0.8571 1.89e-95 3kzy:B, 3kzz:A, 3l00:A, 6y8p:A
3 4wx9:A 161 156 0.3602 0.3602 0.3718 4.19e-22
4 6ga0:A 154 108 0.2112 0.2208 0.3148 1.61e-10
5 7e1p:A 150 152 0.2671 0.2867 0.2829 1.68e-09 7dqq:A
6 4enj:A 108 70 0.1429 0.2130 0.3286 1.22e-04 4enk:A, 4enm:A, 4enn:A, 4enn:B, 3gx4:X, 3gyh:X, 4hdu:A, 4hdv:A
7 8vc5:A 488 70 0.1304 0.0430 0.3000 2.2 8vc5:B
8 8eik:C 407 65 0.1304 0.0516 0.3231 3.8
9 2p3i:A 161 29 0.0745 0.0745 0.4138 5.8 1kqr:A, 2p3j:A, 2p3k:A, 3tb0:A
10 5van:A 861 47 0.1056 0.0197 0.3617 6.4 6nfj:A, 6nfj:D, 5vaq:A
11 5xu6:C 379 43 0.0870 0.0369 0.3256 7.5 5xu6:A, 5xu6:B, 5xu6:D
12 4o7p:B 451 84 0.1429 0.0510 0.2738 7.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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