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BioLiP
>protein
CEMKRTTLDSPLGKLELSGCEQGLHEIIFLGGGPEPLMQATAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKL
LKVVKFGEVISYSHLAALAGNPAATAAVKTALSGNPVPILIPCHRVVQGDLDVGGYEGGLAVKEWLLAHEGHRLGKR

The query sequence (length=157) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3kzy:A 162 161 1.0000 0.9691 0.9752 1.71e-112 3kzy:B, 3kzz:A, 3l00:A, 6y8p:A
2 1eh6:A 168 165 0.8726 0.8155 0.8303 3.98e-94 1eh7:A, 1eh8:A, 1t38:A, 1t39:A, 1t39:B, 1yfh:C, 1yfh:A, 1yfh:B
3 4wx9:A 161 156 0.3567 0.3478 0.3590 1.13e-16
4 6ga0:A 154 145 0.2930 0.2987 0.3172 9.27e-15
5 7e1p:A 150 144 0.2866 0.3000 0.3125 8.90e-11 7dqq:A
6 8vc5:A 488 69 0.1274 0.0410 0.2899 3.7 8vc5:B
7 5cu1:A 197 63 0.1146 0.0914 0.2857 4.5
8 2p3i:A 161 35 0.0828 0.0807 0.3714 6.0 1kqr:A, 2p3j:A, 2p3k:A, 3tb0:A
9 4enj:A 108 46 0.0764 0.1111 0.2609 7.5 4enk:A, 4enm:A, 4enn:A, 4enn:B, 3gx4:X, 3gyh:X, 4hdu:A, 4hdv:A
10 5xr2:C 295 90 0.1338 0.0712 0.2333 9.8 5xr3:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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