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BioLiP
>protein
CAVPEQFRDMPYQPFSKGDRLGKVADWTGATYQDKRYTNKYSQYAYFHEEDESSFQLVDTART

The query sequence (length=63) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ppl:Ix 455 70 1.0000 0.1385 0.9000 7.03e-38 9bln:x, 8pj1:x, 8pj2:x, 8pj3:x, 8pj4:x, 8pj5:x, 8pj6:x, 7qp6:x, 8rg0:x, 8xxn:3N, 6zon:D
2 3ax7:A 1225 23 0.1587 0.0082 0.4348 1.3 3ax7:B, 3ax9:A, 3ax9:B
3 6elz:r 176 45 0.1905 0.0682 0.2667 1.4 6em5:r, 7nac:r, 7r7a:r, 7u0h:r
4 5myj:AC 211 43 0.2381 0.0711 0.3488 1.4
5 1fo4:A 1299 23 0.1587 0.0077 0.4348 1.4 3am9:A, 3am9:B, 3amz:A, 3amz:B, 3b9j:B, 3b9j:C, 3b9j:J, 3b9j:K, 3bdj:A, 3bdj:B, 3etr:B, 3etr:C, 3etr:M, 3etr:N, 3eub:B, 3eub:C, 3eub:K, 3eub:L, 3eub:T, 3eub:U, 3eub:3, 3eub:4, 1fiq:B, 1fo4:B, 8j79:A, 8j79:B, 1n5x:A, 1n5x:B, 3nrz:B, 3nrz:C, 3nrz:K, 3nrz:L, 3ns1:B, 3ns1:C, 3ns1:K, 3ns1:L, 3nvv:B, 3nvv:C, 3nvv:K, 3nvv:L, 3nvw:B, 3nvw:C, 3nvw:K, 3nvw:L, 3nvy:B, 3nvy:C, 3nvy:K, 3nvy:L, 3nvz:B, 3nvz:C, 3nvz:K, 3nvz:L, 3sr6:B, 3sr6:C, 3sr6:K, 3sr6:L, 3una:A, 3una:B, 3unc:A, 3unc:B, 3uni:A, 3uni:B, 1v97:A, 1v97:B, 1vdv:A, 1vdv:B
6 8v83:r 184 44 0.2063 0.0707 0.2955 3.0
7 5oql:D 292 34 0.1587 0.0342 0.2941 3.3
8 6pd2:C 616 35 0.2063 0.0211 0.3714 3.6 6pd1:A, 6pd1:B, 6pd1:D, 6pd2:A, 6pd2:B, 6pd2:D
9 3ndz:A 345 25 0.1270 0.0232 0.3200 4.2 3ndz:C, 3ndz:B, 3ndz:D
10 6ywe:8 331 27 0.1587 0.0302 0.3704 5.0 6yws:8, 6ywv:8, 6ywx:8, 6ywy:8
11 7ohr:r 159 38 0.1587 0.0629 0.2632 5.2
12 6rxt:UD 772 34 0.1587 0.0130 0.2941 5.2 6rxu:UD, 6rxv:UD, 6rxx:UD, 6rxy:UD, 6rxz:UD
13 2uvf:A 571 54 0.2857 0.0315 0.3333 5.8
14 7ywk:A 401 23 0.1587 0.0249 0.4348 6.7 5n81:A, 5n81:B, 5n82:A, 7ywk:B
15 6n8j:r 204 50 0.1905 0.0588 0.2400 7.9
16 3fed:A 690 30 0.1905 0.0174 0.4000 9.4 3fec:A, 3fee:A, 3ff3:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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