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BioLiP
>protein
CAEFRIKYVGAIGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIKVSTDVLHRHALYLIIRMVCYDDGLGAGKSLL
ALKTTDASNEEYSLWVYQCNSLEQAQAICKVLSTAFDS

The query sequence (length=118) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4jif:A 130 129 1.0000 0.9077 0.9147 3.55e-81 4dx9:m, 4dx9:1, 4dx9:C, 4dx9:G, 4dx9:E, 4dx9:I, 4dx9:4, 4dx9:K, 4dx9:5, 4dx9:M, 4dx9:c, 4dx9:e, 4dx9:g, 4dx9:Q, 4dx9:S, 4dx9:W, 4dx9:Y
2 4dx9:0 110 118 0.9068 0.9727 0.9068 1.08e-70 4dx9:k, 4dx9:3, 4dx9:A, 4dx9:s, 4dx9:u, 4dx9:i, 4dx9:U
3 4dx9:O 102 124 0.8051 0.9314 0.7661 7.21e-57 4dx9:a
4 4dx9:y 93 118 0.7627 0.9677 0.7627 2.05e-50
5 4dx9:2 91 118 0.7458 0.9670 0.7458 2.59e-50
6 4dx9:o 63 114 0.5000 0.9365 0.5175 1.36e-17
7 8oo6:A 604 97 0.2034 0.0397 0.2474 0.39 1d8y:A, 1d9d:A, 1d9f:A, 1kfs:A, 2kfn:A, 2kfz:A, 1kln:A, 1krp:A, 1ksp:A, 2kzm:A, 2kzz:A, 8ooy:A, 1qsl:A
8 6st5:A 913 30 0.1017 0.0131 0.4000 0.41
9 1kfd:A 560 54 0.1271 0.0268 0.2778 0.50
10 4alc:A 166 50 0.1356 0.0964 0.3200 5.2 4ale:A, 4alq:A, 4alr:A, 4als:A, 4alt:A
11 3a31:A 465 54 0.1271 0.0323 0.2778 7.4 3a32:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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