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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
CAEFRIKYVGAIEKLGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSIKVSTSDQYDVLHRHALYLIIRMVCYDDGLGAG
KSLLALKTTDASNEEYSLWVYQCNSLEQAQAICKVLSTAFDSVL

The query sequence (length=124) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4jif:A 130 130 0.9919 0.9462 0.9462 3.47e-85 4dx9:m, 4dx9:1, 4dx9:C, 4dx9:G, 4dx9:E, 4dx9:I, 4dx9:4, 4dx9:K, 4dx9:5, 4dx9:M, 4dx9:c, 4dx9:e, 4dx9:g, 4dx9:Q, 4dx9:S, 4dx9:W, 4dx9:Y
2 4dx9:0 110 127 0.8548 0.9636 0.8346 1.96e-64 4dx9:k, 4dx9:3, 4dx9:A, 4dx9:s, 4dx9:u, 4dx9:i, 4dx9:U
3 4dx9:O 102 125 0.7823 0.9510 0.7760 4.79e-59 4dx9:a
4 4dx9:y 93 127 0.7258 0.9677 0.7087 3.29e-46
5 4dx9:2 91 124 0.6935 0.9451 0.6935 8.21e-45
6 4dx9:o 63 119 0.4677 0.9206 0.4874 1.12e-15
7 6st5:A 913 94 0.2177 0.0296 0.2872 0.12
8 8zj7:C 315 57 0.1452 0.0571 0.3158 5.3 8zhy:A, 8zhy:B, 8zhy:D, 8zi8:A, 8zi8:C, 8zi8:D, 8zj0:B, 8zj0:C, 8zj0:D, 8zj3:A, 8zj3:C, 8zj3:B, 8zj3:D, 8zj5:B, 8zj5:C, 8zj5:D, 8zj7:B, 8zj7:A, 8zj7:D
9 7w62:E 141 46 0.1290 0.1135 0.3478 5.8 7bsm:D, 7bsm:F, 7bsm:G, 7bsm:J, 7bsm:K, 7bsm:L, 7bsm:M, 7bsm:N, 7bsm:H, 7bsm:I, 7bsn:A, 7bsn:B, 7bsn:C, 7bsn:E, 7bsn:F, 7bsn:H, 7bsn:I, 7bsn:J, 7bsn:K, 7bsn:N, 7bsn:D, 7bsn:G, 7bsn:L, 7bsn:M, 7bt8:B, 7bt8:D, 7bt8:E, 7bt9:B, 7bt9:G, 7bt9:A, 7bt9:D, 7bt9:E, 7bt9:F, 7bt9:C, 7bt9:H, 7bt9:I, 7bt9:J, 7bt9:K, 7bt9:L, 7bt9:M, 7bt9:N, 7btl:B, 7btl:A, 7btl:E, 7btl:F, 7btl:C, 7btl:G, 7btl:D, 7ded:B, 7ded:C, 7ded:F, 7ded:E, 7w62:B, 7w62:J, 7w62:G, 7w62:A, 7w62:D, 7w62:F, 7w62:C, 7w62:H, 7w62:I, 7w62:K, 7w62:L, 7w62:M, 7w62:N
10 3q1e:D 116 47 0.1048 0.1121 0.2766 7.0 3q1e:A, 3q1e:C, 3q1e:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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