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BioLiP
>protein
CAEFRIKYVGAIEEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDGLG
AGKSLLALKTTDASNEEYSLWVYQCNSLEQAQAICKVLSTAFDSV

The query sequence (length=125) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4jif:A 130 130 1.0000 0.9615 0.9615 5.37e-89 4dx9:m, 4dx9:1, 4dx9:C, 4dx9:G, 4dx9:E, 4dx9:I, 4dx9:4, 4dx9:K, 4dx9:5, 4dx9:M, 4dx9:c, 4dx9:e, 4dx9:g, 4dx9:Q, 4dx9:S, 4dx9:W, 4dx9:Y
2 4dx9:0 110 125 0.8640 0.9818 0.8640 1.05e-68 4dx9:k, 4dx9:3, 4dx9:A, 4dx9:s, 4dx9:u, 4dx9:i, 4dx9:U
3 4dx9:O 102 128 0.7760 0.9510 0.7578 5.38e-58 4dx9:a
4 4dx9:y 93 125 0.7360 0.9892 0.7360 1.72e-50
5 4dx9:2 91 125 0.7120 0.9780 0.7120 2.92e-48
6 4dx9:o 63 120 0.4720 0.9365 0.4917 1.19e-16
7 6st5:A 913 86 0.2080 0.0285 0.3023 0.35
8 1fdj:A 363 28 0.0960 0.0331 0.4286 1.9 1fdj:B
9 3q1e:D 116 49 0.1120 0.1207 0.2857 2.9 3q1e:A, 3q1e:C, 3q1e:B
10 3a31:A 465 54 0.1120 0.0301 0.2593 5.7 3a32:A
11 3lqv:B 115 93 0.1600 0.1739 0.2151 5.8 2f9j:B, 3lqv:A, 7q4o:F, 8qo9:B6, 8qxd:B6, 8qzs:B6, 8r08:B6, 8r09:B6, 8r0a:B6, 8r0b:B6, 8rm5:B6
12 3a9v:A 528 66 0.1440 0.0341 0.2727 7.4 3ni2:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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