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BioLiP
>protein
CAEFRIKYVGAIEEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIKHRHALYLIIRMVCYDDGKSLLALKTTEYS
LWVYQCNSLEQAQAICKVLSTAFDSV

The query sequence (length=106) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4jif:A 130 130 1.0000 0.8154 0.8154 1.10e-66 4dx9:m, 4dx9:1, 4dx9:C, 4dx9:G, 4dx9:E, 4dx9:I, 4dx9:4, 4dx9:K, 4dx9:5, 4dx9:M, 4dx9:c, 4dx9:e, 4dx9:g, 4dx9:Q, 4dx9:S, 4dx9:W, 4dx9:Y
2 4dx9:0 110 113 0.9528 0.9182 0.8938 1.17e-64 4dx9:k, 4dx9:3, 4dx9:A, 4dx9:s, 4dx9:u, 4dx9:i, 4dx9:U
3 4dx9:O 102 109 0.9151 0.9510 0.8899 2.02e-62 4dx9:a
4 4dx9:y 93 107 0.8302 0.9462 0.8224 2.12e-50
5 4dx9:2 91 108 0.8113 0.9451 0.7963 1.79e-48
6 4dx9:o 63 102 0.5283 0.8889 0.5490 5.92e-18
7 6st5:A 913 30 0.1132 0.0131 0.4000 0.37
8 1fdj:A 363 28 0.1132 0.0331 0.4286 1.4 1fdj:B
9 5o1n:A 442 49 0.1415 0.0339 0.3061 5.5 5l78:A, 5l78:B, 5o1o:A, 5o1o:B
10 3a31:A 465 28 0.0943 0.0215 0.3571 7.3 3a32:A
11 4gmk:A 227 31 0.1132 0.0529 0.3871 7.5 4gmk:B
12 8unf:A 187 45 0.1415 0.0802 0.3333 9.2 3u5z:A, 3u5z:K, 3u60:A, 8uh7:A, 8uk9:A, 8uk9:Q

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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