Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AYTLPDPLVGADGTRVHDRATWQHRRRPELLQLFAREVYGRTPLGRPEGMVFKVTTMEHAALGGAATRKEVTVRFGRDPN
APSMQLLLYVPNAVIARAERAPVFLGLNFYGNHTVAQKWPVEQILARGYAVATVYCGDLCPDRPDGLNASVASWDQRAPD
AWGAIGVWAWGLSRALDYLETDPLVDASRVAVHGHARLGKAALWAGAQDDRFALVISNESGCGGAALSKRIHGETVARIN
TVFPHWFARNFRRYDDHEEALPVDQHELLALVAPRPLYVASAEDDDWADPRGEFLAVKAAEPVFRLFGQTGPSGEDVPRV
NEPSGGALRYHIRPGPHGMTAQDWAFYLAFADEWLK

The query sequence (length=356) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6syu:A 402 395 0.9972 0.8831 0.8987 0.0 6grw:A, 6gs0:A, 6syr:A, 6syv:A, 6sz0:A, 6sz4:A, 6t0e:A, 6t0e:B, 6t0i:A
2 7b7h:A 370 374 0.9831 0.9459 0.9358 0.0 6szo:A
3 8qcl:A 390 377 0.4747 0.4333 0.4483 1.95e-111 8qcl:B, 8qef:B
4 8tru:A 378 318 0.2612 0.2460 0.2925 1.75e-26
5 6ru1:B 386 337 0.2669 0.2461 0.2819 1.75e-21 6ru2:A, 6ru2:B, 6rv7:B, 6rv8:B, 6rv8:A, 6rv9:B
6 4g4j:A 369 318 0.2500 0.2412 0.2799 6.83e-19
7 6rax:4 626 148 0.1152 0.0655 0.2770 0.007 6raw:4, 6ray:4, 6raz:4
8 8rd8:MB 119 74 0.0618 0.1849 0.2973 0.54 8rdv:MB, 8rdw:MB
9 6jkh:A 212 57 0.0590 0.0991 0.3684 0.77 6jkh:B
10 8erb:K 429 140 0.0955 0.0793 0.2429 1.3 8erb:A, 8erb:C, 8erb:B, 8erb:D, 8erb:G, 8erb:H, 8erb:F, 8erb:P, 8erb:I, 8erb:J, 8erb:M, 8erb:E, 8erb:Q, 8erb:N, 8erb:L, 8erj:A, 8erj:B, 8erj:C, 8erj:D, 8erj:E, 8erj:F, 8erj:H, 8erj:G
11 4hxg:F 614 134 0.0927 0.0537 0.2463 2.3 4hxe:B, 4hxf:B, 4hxg:A, 4hxg:B, 4hxg:C, 4hxg:D, 4hxg:E, 4hxg:G, 4hxg:H, 4hxg:I, 4hxg:L
12 8r56:D 673 117 0.0843 0.0446 0.2564 2.4 8r56:A, 8r56:B, 8r56:C
13 6aid:A 261 43 0.0506 0.0690 0.4186 2.6 3wyn:A, 3wyn:B
14 2wfk:A 255 69 0.0562 0.0784 0.2899 2.7 3frl:A, 3frl:B, 2wfk:B, 2wfk:C, 2wfk:D, 2wfk:E
15 1tu5:A 633 70 0.0506 0.0284 0.2571 8.4 2pnc:A, 2pnc:B, 1tu5:B
16 7q54:C 368 35 0.0365 0.0353 0.3714 8.7 2pkq:O, 2pkq:Q, 2pkq:T, 7q53:O, 7q53:Q, 7q54:Q, 7q54:O, 7q54:A, 7q55:O, 7q55:Q, 7q55:A, 7q55:C, 7q55:E, 7q55:G, 7q55:I, 7q55:K, 7q56:K, 7q56:E, 7q56:I, 7q56:A, 7q56:G, 7q56:C, 7q56:Q, 7q56:O, 7q57:O, 7q57:Q, 7q57:A, 7q57:C, 7q57:G, 7q57:E, 7q57:I, 7q57:K, 7q57:M, 7q57:S

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218