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BioLiP
>protein
AYQLTCYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFAGMQNNEITTIEWNDVTLYQAFNGLKNKNSQLKTLLAIGGWN
FGTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMV
TAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKL
IVGFPTYGHNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAYYEICTFLKNGATQGWDAPQEVPYAYQGNVWVGYDNIK
SFDIKAQWLKHNKFGGAMVWAIDLDDFTGTFCNQGKFPLISTLKKALGLQSASCTAP

The query sequence (length=377) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3fy1:A 377 376 0.9947 0.9947 0.9973 0.0 3fy1:B, 3rm4:A, 3rm4:B, 3rm8:A, 3rm8:B, 3rm9:A, 3rm9:B, 3rme:A, 3rme:B, 2ybt:A, 2ybt:B, 2ybt:C, 2ybt:D, 2ybt:E, 2ybt:F, 2ybu:A, 2ybu:B, 2ybu:C, 2ybu:D, 2ybu:E, 2ybu:F
2 8fr9:B 374 370 0.8302 0.8369 0.8459 0.0 8frb:D
3 1e9l:A 372 372 0.6711 0.6801 0.6801 0.0
4 5nr8:A 377 367 0.5570 0.5570 0.5722 2.19e-163 1hki:A, 1hkj:A, 1hkk:A, 1hkm:A, 6jjr:A, 6jk6:A, 5nra:A, 5nrf:A, 1waw:A, 1wb0:A, 6ze8:A, 6ze8:B, 6ze8:C, 6ze8:D, 6ze8:E, 6ze8:F
5 8r42:B 362 368 0.4960 0.5166 0.5082 4.27e-131 8r41:A, 8r41:B, 8r42:A, 8r4x:A, 8r4x:B, 8r4x:C, 8r4x:D
6 2aos:A 361 368 0.5040 0.5263 0.5163 2.10e-130 2fdm:A, 4mav:A, 4ml4:A, 4nsb:A, 2olh:A, 4q7n:A, 5z05:A, 5z3s:A, 5z4w:A, 1zbc:A, 1zbk:A, 1zbv:A, 1zbw:A, 1zl1:A
7 6le7:A 381 379 0.4430 0.4383 0.4406 5.32e-103 6le8:A
8 3wqv:A 383 380 0.4297 0.4230 0.4263 2.59e-99 3wqw:A
9 6jmb:A 374 376 0.4058 0.4091 0.4069 1.46e-95
10 6jav:A 377 378 0.4005 0.4005 0.3995 3.26e-94 6jaw:A, 6jax:A, 6jay:A
11 4r5e:A 343 345 0.3130 0.3440 0.3420 1.76e-56
12 6bt9:B 626 325 0.2838 0.1709 0.3292 2.47e-48 6bt9:A
13 6kst:B 372 362 0.2838 0.2876 0.2956 1.16e-46 6kxl:A, 6kxl:B, 6kxm:A, 6kxm:B, 6kxn:A, 6kxn:B
14 8c6z:A 573 404 0.2944 0.1937 0.2748 2.68e-42 8ovr:A
15 7akq:A 389 390 0.3130 0.3033 0.3026 2.91e-42 6epb:A, 6ylj:A, 6yn4:A
16 1ll4:A 392 390 0.3050 0.2934 0.2949 6.67e-41 1ll4:B, 1ll4:C, 1ll4:D
17 3g6m:A 388 386 0.2997 0.2912 0.2927 2.75e-39
18 2a3c:A 395 391 0.3024 0.2886 0.2916 2.65e-38 2a3a:A, 2a3a:B, 2a3b:A, 2a3b:B, 2a3c:B, 2a3e:A, 2a3e:B, 3ch9:A, 3ch9:B, 3chc:A, 3chc:B, 3chd:A, 3chd:B, 3che:A, 3che:B, 3chf:A, 3chf:B, 2iuz:A, 2iuz:B, 1w9u:A, 1w9u:B, 1w9v:A, 1w9v:B
19 8hw8:A 326 333 0.2679 0.3098 0.3033 1.50e-35
20 1jne:A 400 411 0.2865 0.2700 0.2628 2.77e-35
21 6hm1:A 386 383 0.2918 0.2850 0.2872 1.24e-31
22 8ose:A 563 443 0.2997 0.2007 0.2551 4.34e-31 8owf:A
23 7vrg:A 540 301 0.2255 0.1574 0.2824 2.99e-30 5gqb:A, 6jmn:A, 7vrg:B
24 1e6z:B 498 376 0.2706 0.2048 0.2713 1.46e-28 7c34:A, 7c34:B, 7c92:A, 7c92:B, 7cb1:A, 7cb1:B, 1e6r:A, 1e6r:B, 1e6z:A, 1h0g:B, 1h0g:A, 1h0i:A, 1h0i:B, 6jk9:A, 6jk9:B, 6jkf:A, 6jkf:B, 1o6i:A, 1o6i:B, 1ogg:A, 1ogg:B, 1ur8:A, 1ur8:B, 1ur9:A, 1ur9:B, 1w1p:A, 1w1p:B, 1w1t:A, 1w1t:B, 1w1v:A, 1w1v:B, 1w1y:A, 1w1y:B, 3wd1:A, 3wd2:A, 3wd3:A, 3wd4:A, 4z2g:A, 4z2h:A, 4z2i:A, 4z2j:A, 4z2k:A, 4z2l:A
25 1ffq:A 540 327 0.2573 0.1796 0.2966 2.82e-28 7fd6:A, 2wk2:A, 2wly:A, 2wlz:A, 2wm0:A, 1x6n:A
26 6t9m:AAA 350 325 0.2308 0.2486 0.2677 1.22e-27
27 3arq:A 575 335 0.2493 0.1635 0.2806 3.46e-27 3arp:A, 3arr:A, 3art:A, 3aru:A, 3arv:A, 3arw:A, 3arx:A, 3ary:A, 3arz:A, 3as0:A, 3as1:A, 3as2:A, 3as3:A, 8hrf:A, 8hrf:B
28 5df0:A 528 294 0.2175 0.1553 0.2789 9.17e-23 5df0:B
29 4wiw:D 349 194 0.1300 0.1404 0.2526 7.94e-11 4wiw:A, 4wiw:B, 4wiw:C, 4wiw:E, 4wiw:F
30 3co4:A 311 258 0.1538 0.1865 0.2248 7.80e-07
31 5jh8:A 317 182 0.1088 0.1293 0.2253 5.54e-04
32 5kz6:A 327 285 0.1963 0.2263 0.2596 0.001 3n13:A, 3n15:A, 3n17:A, 3n18:A, 3n1a:A
33 4tx8:A 374 50 0.0451 0.0455 0.3400 0.15
34 8u9f:A 271 81 0.0637 0.0886 0.2963 0.35 8u48:B, 8u48:A
35 4pkg:G 168 55 0.0504 0.1131 0.3455 1.4 4pkh:B
36 3ra7:H 225 51 0.0398 0.0667 0.2941 2.7 3ra7:I
37 6ve1:C 268 76 0.0610 0.0858 0.3026 4.3 1c8y:A, 6ve1:B, 6ve1:D
38 6kpm:A 295 56 0.0424 0.0542 0.2857 7.8 6kpn:A, 6kpo:A
39 4okd:A 801 73 0.0557 0.0262 0.2877 9.2 4okd:B
40 5k6w:A 475 40 0.0318 0.0253 0.3000 9.4 5k6v:A, 5k6w:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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