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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AYLRDGKSNLVSKVVELHGETYATTVKMGLSKTPNTATSAKVKIDAAYLETYNKAHNTDFALYPQDLVTFANEGILTVNA
NTKSAEVEMTIRAGEGLQEDKTYAIPVAISDQSSDITIKDEDAKHCIYLVKDMRNAGDAYKGEGVMQGYLFFEVNDVNPL
NTLSFQLENGKLLWDVVVLFAANINYDAEAGRPRVQCNPNVQYLLDNNETLLQPLRRRGVKVLLGLLGNHDITGLAQLSE
QGAKDFAREVAQYCKAYNLDGVNYDDEYSNSPDLSNPSLTNPSTAAAARLCYETKQAMPDKLVTVFDWGQMYGVATVDGV
DAKEWIDIVVANYGSAAYPIGQMTKKQCSGISMEFNLGGGGSLSASKAQSMIDGGYGWFMGFAPSPAKYGSVFSRLQGGG
EVLYGSNVAAPTIFYKKNDPTPYKYPDDL

The query sequence (length=429) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7nwf:A 432 429 1.0000 0.9931 1.0000 0.0 6t8k:A, 6t8k:B, 6t8l:A, 6tcw:A
2 6tcv:B 397 428 0.9207 0.9950 0.9229 0.0
3 6ve1:C 268 235 0.1818 0.2910 0.3319 3.96e-32 1c8y:A, 6ve1:B, 6ve1:D
4 8u9f:A 271 164 0.1515 0.2399 0.3963 3.68e-31 8u48:B, 8u48:A
5 6hm1:A 386 62 0.0606 0.0674 0.4194 0.10
6 3co4:A 311 94 0.0513 0.0707 0.2340 0.93
7 6t9m:AAA 350 36 0.0350 0.0429 0.4167 2.2
8 4wv3:B 518 47 0.0326 0.0270 0.2979 2.4 4wv3:A
9 3dzd:A 368 86 0.0583 0.0679 0.2907 2.9 3dzd:B
10 3fwz:A 140 35 0.0303 0.0929 0.3714 3.2 3fwz:B
11 8uw8:A 738 83 0.0583 0.0339 0.3012 6.5
12 6tr4:A 506 189 0.0932 0.0791 0.2116 6.6 6tr3:A, 6tr4:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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