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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AYKPQFYPGATKIAQNRRDHLNPDFELEKLREIPDEELVKVMGHRQPGEDYKTVHPPLEEMDLPEDYVRDLVEPISGAKE
GHRIRYIQFADSMYFAPAQPYDRARMYMWRFRGVDTGSLSGRQVIEMRESNLEEISKNVLMDTSLFDPARIGMRGATVHG
HSLRLDENGLMFDALQRYVYDEKTGHVVYVKDQVGRPLDEPVDVGEPLPEEKLREITTIYRKDGVPMRDDEELLTVVKRI
HRARTLGGYMPVNEVFDKLL

The query sequence (length=260) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5n1q:F 260 260 1.0000 1.0000 1.0000 0.0 5n1q:C
2 5n28:C 258 258 0.8615 0.8682 0.8682 6.42e-172 5n28:F, 5n2a:C
3 5a8r:L 263 249 0.7038 0.6958 0.7349 2.24e-137 5a8r:F, 5a8r:C, 5a8r:I, 5a8w:F, 5a8w:C, 5a8w:I, 5a8w:L
4 5a0y:F 248 245 0.6038 0.6331 0.6408 1.19e-115 5a0y:C, 5a8k:C, 5a8k:F, 7b2h:C, 7b2h:F, 5g0r:F, 5g0r:C, 1hbm:C, 1hbm:F, 1hbn:C, 1hbn:F, 1hbo:C, 1hbo:F, 1hbu:C, 1hbu:F, 3m1v:F, 3m1v:C, 3m2r:F, 3m2r:C, 3m2u:F, 3m2u:C, 3m2v:F, 3m2v:C, 3m30:F, 3m30:C, 3m32:F, 3m32:C, 1mro:F, 1mro:C, 3pot:F, 3pot:C, 7suc:c, 7suc:C, 7sxm:F, 7sxm:C
5 1e6v:F 248 246 0.6385 0.6694 0.6748 1.18e-112 1e6v:C
6 3sqg:F 278 257 0.4769 0.4460 0.4825 1.63e-85 3sqg:C, 3sqg:I
7 7nkg:F 247 251 0.4962 0.5223 0.5139 5.99e-84 7nkg:C, 7nkg:L, 7nkg:I
8 1e6y:F 247 251 0.5038 0.5304 0.5219 1.71e-83 1e6y:C, 8gf5:E
9 7b1s:C 265 262 0.4192 0.4113 0.4160 5.86e-65 7b1s:F, 7b2c:C, 7b2c:F
10 2oi6:B 452 36 0.0538 0.0310 0.3889 1.9 4aa7:A, 4aa7:B, 1fwy:A, 1fwy:B, 1hv9:A, 1hv9:B, 2oi5:A, 2oi5:B, 2oi6:A, 2oi7:A, 2oi7:B, 3twd:A, 3twd:B
11 4fce:A 441 36 0.0500 0.0295 0.3611 2.2
12 4e1k:A 450 36 0.0500 0.0289 0.3611 3.6 4knr:A, 4knx:A, 4kpx:A, 4kpz:A, 4kql:A, 2v0i:A, 2v0j:A, 2v0k:A, 2v0l:A, 2vd4:A, 2w0v:A, 2w0w:A
13 5t38:A 238 60 0.0692 0.0756 0.3000 4.2 5t39:A
14 4v4n:AB 239 28 0.0462 0.0502 0.4286 5.2 4v6u:BB
15 5h6s:C 457 74 0.0731 0.0416 0.2568 5.6 5h6s:A, 5h6s:B, 5h6s:D
16 3im9:A 313 79 0.0885 0.0735 0.2911 6.9
17 5d43:A 150 65 0.0692 0.1200 0.2769 8.2 5d43:B
18 8gps:A 228 30 0.0385 0.0439 0.3333 8.7
19 8fkp:NE 156 37 0.0538 0.0897 0.3784 9.6 8fkq:NE, 8fkr:NE, 8fks:NE
20 3q3h:B 595 39 0.0654 0.0286 0.4359 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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