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BioLiP
>protein
AYGDGPKKWGAVLLPLTIFGVGITAMGTFVLYTFSEDFFWAFVPGSKRSMELEKKKKEMAEKYPSPVVQHPADPLAGLVN
RADYEKGLEEAWDKVKPKGSTVTVEEKLKELSTQNNPHYWRNAIKS

The query sequence (length=126) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8jw0:i 126 126 1.0000 1.0000 1.0000 3.18e-91
2 8jjr:i 120 123 0.5238 0.5500 0.5366 7.96e-40
3 8jze:i 119 122 0.5317 0.5630 0.5492 1.21e-39 8jzf:i
4 5hiw:A 391 51 0.1429 0.0460 0.3529 0.43
5 5gan:B 1781 53 0.1270 0.0090 0.3019 1.1 4bgd:A, 5gao:B, 5gap:B, 5nrl:B, 5zwm:D, 5zwo:D
6 2glj:A 456 65 0.1825 0.0504 0.3538 1.9 2glj:B, 2glj:C, 2glj:D, 2glj:E, 2glj:F, 2glj:G, 2glj:H, 2glj:I, 2glj:J, 2glj:K, 2glj:L, 2glj:M, 2glj:N, 2glj:O, 2glj:P, 2glj:Q, 2glj:R, 2glj:S, 2glj:T, 2glj:U, 2glj:V, 2glj:W, 2glj:X
7 5zer:A 354 50 0.1349 0.0480 0.3400 5.9 5zer:B, 5zes:A, 5zfk:A, 5zfk:B
8 4xau:C 374 58 0.1190 0.0401 0.2586 6.6
9 4hln:A 504 36 0.1032 0.0258 0.3611 7.9
10 1tec:E 279 50 0.1190 0.0538 0.3000 9.0 2tec:E, 3tec:E, 1thm:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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