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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AWPTHVVCSDSGLEVLYQSCDPLQDFGFSVEKCSKQLKSNINIRFGIILREDIKELFLDLALMSQGSSVLNFSYPICEAA
LPKFSFCGRRKGEQIYYAGPVNNPEFTIPQGEYQVLLELYTEKRSTVACANATIMCSEF

The query sequence (length=139) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3b2d:C 139 139 1.0000 1.0000 1.0000 1.03e-102 3b2d:D
2 3t6q:C 139 139 0.7194 0.7194 0.7194 2.16e-79 3m7o:A, 3m7o:D, 3t6q:D
3 3rg1:C 138 135 0.7122 0.7174 0.7333 4.56e-78 3rg1:O, 3rg1:D, 3rg1:H, 3rg1:L, 3rg1:P
4 3mu3:A 140 133 0.4245 0.4214 0.4436 2.86e-42 3mu3:B
5 5ijd:C 137 130 0.2230 0.2263 0.2385 1.53e-05 5ijc:D, 5ijc:C, 5ijd:D, 7mlm:C, 3vq1:C, 3vq1:D, 3vq2:C, 3vq2:D
6 2e59:A 144 119 0.2014 0.1944 0.2353 7.80e-05 4g8a:C, 4g8a:D, 3ula:D, 3ula:B, 2z65:C, 2z65:D
7 7ye1:G 103 63 0.1295 0.1748 0.2857 0.15 7ye2:G, 5yiv:A, 5yiv:B, 5yiv:C, 5yiv:D, 5yiw:A, 5yiw:C, 5yix:B, 5z7i:A, 5z7i:C
8 2re1:A 148 26 0.0647 0.0608 0.3462 0.27
9 8y9b:B 1607 58 0.1367 0.0118 0.3276 4.2
10 5tf4:D 268 30 0.0791 0.0410 0.3667 4.7 5tf4:A, 5tf4:B, 5tf4:C, 5tf4:E, 5tf4:F
11 3jaj:z 426 36 0.0935 0.0305 0.3611 6.9 6frk:x, 3jan:z, 7obq:x, 6r6g:AB
12 7obr:x 488 36 0.0935 0.0266 0.3611 7.0 2go5:W, 2j37:W, 5l3q:A, 5l3q:C, 1mfq:C, 7nfx:x, 7qwq:x, 1ry1:W, 4ue5:D, 6y2z:A, 6y32:A, 6y32:C, 6y32:E, 6y32:G
13 3k31:A 262 27 0.0719 0.0382 0.3704 9.0
14 7w7g:B 1711 29 0.0863 0.0070 0.4138 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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