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BioLiP
>protein
AWPTHTACRNGNLQVLYQSCDPLQDFGFSVDQCARQLKPNINIRFGMVLREDIEQLFLDVALFSKGLSILNFSYPVCEVD
LPKFSFCGRRKGEQIYYAGPINNPGFEIPEGDYQVLLELYNQDHATVACANATVLYSA

The query sequence (length=138) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3rg1:C 138 136 0.9855 0.9855 1.0000 5.07e-101 3rg1:O, 3rg1:D, 3rg1:H, 3rg1:L, 3rg1:P
2 3b2d:C 139 137 0.7246 0.7194 0.7299 2.03e-78 3b2d:D
3 3t6q:C 139 137 0.6957 0.6906 0.7007 6.03e-77 3m7o:A, 3m7o:D, 3t6q:D
4 3mu3:A 140 133 0.4565 0.4500 0.4737 4.94e-44 3mu3:B
5 5ijd:C 137 131 0.2029 0.2044 0.2137 3.87e-05 5ijc:D, 5ijc:C, 5ijd:D, 7mlm:C, 3vq1:C, 3vq1:D, 3vq2:C, 3vq2:D
6 2e59:A 144 119 0.1667 0.1597 0.1933 5.38e-04 4g8a:C, 4g8a:D, 3ula:D, 3ula:B, 2z65:C, 2z65:D
7 1kgz:B 330 41 0.1232 0.0515 0.4146 0.13 1kgz:A
8 7ye1:G 103 75 0.1449 0.1942 0.2667 0.70 7ye2:G, 5yiv:A, 5yiv:B, 5yiv:C, 5yiv:D, 5yiw:A, 5yiw:C, 5yix:B, 5z7i:A, 5z7i:C
9 4o1e:A 271 43 0.1159 0.0590 0.3721 1.5 4o1e:B, 4o1f:A, 4o1f:B
10 6r4n:C 147 146 0.2681 0.2517 0.2534 3.8 6r4n:A, 6r4n:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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