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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AWCWASYLEEEKAVAVPAKLFKEHQSFPYNKNGFKVGMKLEGVDPEHQSVYCVLTVAEVCGYRIKLHFDGYSDCYDFWVN
ADALDIHPVGWCEKTGHKLHPPKGYKEEEFNWQTYLKTCKAQAAPKSLFENQNITVIPSGFRVGMKLEAVDKKNPSFICV
ATVTDMVDNRFLVHFDNWDESYDYWCEASSPHIHPVGWCKEHRRTLITPPGYVKHFSWDKYLEETNSLPAPARAFKVKPP
HGFQKKMKLEVVDKRNPMFIRVATVADTDDHRVKVHFDGWNNCYDYWIDADSPDIHPVGWCSKTGHPLQPPLS

The query sequence (length=313) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3ut1:A 313 313 1.0000 1.0000 1.0000 0.0 4fl6:A, 4fl6:B, 4l59:A
2 2rhu:A 325 315 0.6613 0.6369 0.6571 7.62e-164 6byb:A, 3oq5:A, 3oq5:C, 3p8h:A, 3p8h:B, 2pqw:A, 2rhi:A, 2rhx:A, 2rhy:A, 2rje:A, 2rje:B, 2rjf:A, 2rjf:C, 3uwn:A
3 2vyt:A 214 210 0.2684 0.3925 0.4000 1.57e-51 4edu:A
4 2vyt:A 214 212 0.2748 0.4019 0.4057 5.72e-47 4edu:A
5 2vyt:A 214 101 0.1406 0.2056 0.4356 1.43e-20 4edu:A
6 4c5i:A 423 289 0.3642 0.2695 0.3945 3.63e-51
7 4c5i:A 423 328 0.2875 0.2128 0.2744 5.40e-27
8 4c5i:A 423 99 0.1342 0.0993 0.4242 1.03e-20
9 4c5i:A 423 218 0.2013 0.1489 0.2890 5.05e-16
10 3f70:B 410 284 0.3546 0.2707 0.3908 7.47e-50
11 3f70:B 410 189 0.2620 0.2000 0.4339 2.59e-36
12 3f70:B 410 321 0.3163 0.2415 0.3084 1.03e-33
13 3f70:B 410 211 0.2013 0.1537 0.2986 4.80e-22
14 3f70:B 410 99 0.1470 0.1122 0.4646 5.33e-21
15 3f70:B 410 110 0.1118 0.0854 0.3182 8.49e-10
16 2r58:A 212 216 0.2971 0.4387 0.4306 7.76e-50 2r5a:A, 2r5m:A
17 2r58:A 212 209 0.2524 0.3726 0.3780 6.96e-39 2r5a:A, 2r5m:A
18 2r58:A 212 101 0.1406 0.2075 0.4356 5.98e-19 2r5a:A, 2r5m:A
19 3f70:A 392 284 0.3355 0.2679 0.3697 2.12e-48
20 3f70:A 392 176 0.2524 0.2015 0.4489 6.21e-39
21 3f70:A 392 318 0.3035 0.2423 0.2987 4.47e-31
22 3f70:A 392 99 0.1470 0.1173 0.4646 4.86e-21
23 3f70:A 392 206 0.1917 0.1531 0.2913 4.80e-20
24 3f70:A 392 108 0.1054 0.0842 0.3056 6.38e-10
25 3h6z:A 431 295 0.3323 0.2413 0.3525 7.52e-48 4c5h:A, 3h6z:B
26 3h6z:A 431 333 0.3227 0.2343 0.3033 2.29e-32 4c5h:A, 3h6z:B
27 3h6z:A 431 203 0.2396 0.1740 0.3695 1.15e-29 4c5h:A, 3h6z:B
28 3h6z:A 431 102 0.1438 0.1044 0.4412 1.27e-18 4c5h:A, 3h6z:B
29 2vyt:B 183 208 0.2396 0.4098 0.3606 1.51e-39
30 2vyt:B 183 208 0.2428 0.4153 0.3654 1.67e-37
31 6l1p:C 70 56 0.0543 0.2429 0.3036 0.005 6l1f:B, 6l1p:B, 6l1p:A, 6l1p:D
32 6l1p:C 70 61 0.0543 0.2429 0.2787 0.078 6l1f:B, 6l1p:B, 6l1p:A, 6l1p:D
33 6qud:A 837 35 0.0383 0.0143 0.3429 4.0
34 3brn:A 153 115 0.1054 0.2157 0.2870 8.8 3brn:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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