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BioLiP
>protein
AVYNIGWSFNVNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLTRGQNYFICSFPGHC
GGGMKIAINAK

The query sequence (length=91) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1f56:A 91 91 1.0000 1.0000 1.0000 3.30e-63 1f56:B, 1f56:C
2 2cbp:A 96 86 0.5495 0.5208 0.5814 2.26e-34
3 1ws7:A 107 76 0.3516 0.2991 0.4211 2.54e-15 1ws7:B, 1ws7:C, 1ws7:D, 1ws8:A, 1ws8:B, 1ws8:C, 1ws8:D
4 1x9r:A 105 83 0.3077 0.2667 0.3373 4.68e-12 1x9r:B, 1x9u:A, 1x9u:B
5 1jer:A 110 96 0.3297 0.2727 0.3125 3.43e-08
6 2h3x:C 128 45 0.2198 0.1562 0.4444 0.011 2h3x:F, 2h47:C, 2iaa:C
7 6l1v:A 129 41 0.1868 0.1318 0.4146 0.077 6l1v:C, 6l1v:E, 6l1v:G, 1rkr:A, 1rkr:B, 1rkr:C, 1rkr:D
8 1a4a:A 129 49 0.2088 0.1473 0.3878 0.46 1a4a:B, 1a4b:A, 1a4b:B, 1a4c:A, 1a4c:B, 1a4c:C, 1a4c:D, 1azb:A, 1azb:B, 1azc:A, 1azc:B, 2aza:A, 2aza:B, 1uri:A, 1uri:B
9 2ccw:A 129 48 0.1978 0.1395 0.3750 0.48 1dyz:A, 1dz0:A
10 6kol:A 125 30 0.1319 0.0960 0.4000 0.57 6l9s:A
11 1dlw:A 116 53 0.1758 0.1379 0.3019 0.88 1uvy:A
12 1nwo:A 128 20 0.1319 0.0938 0.6000 0.89 1nwo:B, 1nwp:A, 1nwp:B
13 1joi:A 128 20 0.1319 0.0938 0.6000 0.92
14 2n0m:A 130 28 0.1319 0.0923 0.4286 0.94 3ay2:A, 3ay2:B
15 1ov8:A 139 18 0.1099 0.0719 0.5556 0.98 1ov8:B, 1ov8:C, 1ov8:D, 1qhq:A
16 6tfo:C 424 67 0.2418 0.0519 0.3284 1.1 6tfd:A, 6tfd:C, 6tfd:B, 6tfo:A, 6tfo:B
17 5syd:B 131 20 0.1209 0.0840 0.5500 1.2 5syd:A
18 1cur:A 155 19 0.0989 0.0581 0.4737 1.6 1a3z:A, 1a8z:A, 2cak:A, 2cal:A, 1e30:A, 1e30:B, 1gy1:A, 1gy1:B, 1gy2:A, 1gy2:B, 1rcy:A
19 6grd:A 407 55 0.1648 0.0369 0.2727 2.9 5cnq:A, 5co8:C, 5co8:A, 6grb:A, 6grc:A
20 2e22:A 752 17 0.1209 0.0146 0.6471 4.0 1j0m:A, 1j0n:A, 1x1i:A, 1x1j:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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