BioLiP

>protein
AVTFYEDINYGGASVSLQPGNYTLSQLNTAKIPNDWMSSLKVPSGWTVDVYENDNFTGTKWTYTSDTPWVGNDANDKMTS
VKIYS

The query sequence (length=85) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

#	Hit	Hit length	Aligned length	Identity (normalized by query)	Identity (normalized by hit)	Identity (normalized by aligned length)	E-value	Homologs to hit
1	3so1:H	89	85	0.9882	0.9438	0.9882	1.25e-57	5ht8:A, 3i9h:A, 3i9h:B, 3i9h:C, 3i9h:D, 3i9h:E, 3i9h:F, 3i9h:G, 3i9h:H, 3iaj:A, 3sny:A, 3snz:A, 3so0:A, 3so0:B, 3so0:C, 3so0:D, 3so0:E, 3so0:F, 3so0:G, 3so1:A, 3so1:B, 3so1:C, 3so1:D, 3so1:E, 3so1:F, 3so1:G
2	3hzb:D	90	85	0.3529	0.3333	0.3529	5.23e-15	3hzb:A, 3hzb:B, 3hzb:C, 3hzb:E, 3hzb:F, 3hzb:G, 3hzb:H
3	1prr:A	173	84	0.3294	0.1618	0.3333	1.74e-11	1nps:A, 1prs:A
4	1prr:A	173	83	0.3647	0.1792	0.3735	3.96e-10	1nps:A, 1prs:A
5	2k1w:A	85	38	0.2118	0.2118	0.4737	3.91e-05	5ht9:A, 5ht9:B, 3hz2:A, 3hz2:B, 3hz2:C, 3hz2:D
6	2k1w:A	85	38	0.2118	0.2118	0.4737	0.003	5ht9:A, 5ht9:B, 3hz2:A, 3hz2:B, 3hz2:C, 3hz2:D
7	6sli:A	482	58	0.2353	0.0415	0.3448	0.97	5cx8:A, 5cx8:B, 6sli:C, 6sli:F, 6sli:I, 6slj:D, 6slj:C, 6sln:C, 6sln:D, 6sm3:A, 6smq:A
8	8g27:I	720	24	0.0941	0.0111	0.3333	4.1	8g27:C, 8g27:D, 8g2j:C, 8g2j:D, 8g2j:I, 6wlb:A, 6wlb:C, 6wlb:B
9	5znh:A	314	46	0.1529	0.0414	0.2826	4.6	5zsx:A, 5zsz:A
10	5nmx:D	409	38	0.1412	0.0293	0.3158	5.2	5nmw:A, 5nmw:B, 5nmw:C, 5nmw:D, 5nmx:A, 5nmx:B, 5nmx:C
11	6s6z:A	1083	57	0.1647	0.0129	0.2456	5.4	6s6z:D, 6s6z:B, 6s6z:H, 6s6z:F, 6s6z:G, 6s6z:E, 6s6z:C, 6sd0:A, 6sd0:B, 6sd0:C, 6sd0:D
12	1l9y:A	263	39	0.1176	0.0380	0.2564	6.2	1jt1:A, 1k07:A, 1k07:B, 1l9y:B, 5w90:A, 5wck:A, 5wck:B

[Back]