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BioLiP
>protein
AVQGLFGEYYAYAQGSDGGNLSNVAQVKAFIAANEADATFIGRNIDYGSVSGDLGGNGKVQSFLKDDAGSLSTDPENSSD
AIVKLTGNLELQAGTYQFRVRADDGYRIEVNGQTVAEYNGNQGANTRTGSEFTLTGDGPHSVEIVYWDQGGAAQLRIELR
EQGGAYEIFGSQHASHG

The query sequence (length=177) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6m8m:A 177 177 1.0000 1.0000 1.0000 2.00e-127
2 5j6y:A 188 162 0.3729 0.3511 0.4074 4.99e-36 6x7j:A, 6x7t:A, 6x7x:A, 6x7y:A, 6x7z:A, 6x8a:A, 6x8d:A, 6x8y:A, 6x95:A, 6x9m:A, 6x9p:A, 6xa5:A, 6xac:A, 6xaq:A
3 4qsh:C 1081 40 0.1073 0.0176 0.4750 0.037 4qsh:A, 4qsh:D, 4qsh:B, 4qsk:A, 4qsk:B
4 5vyz:A 1144 51 0.1186 0.0184 0.4118 0.25 5vyw:D, 5vyz:B, 5vyz:D, 5vz0:A, 5vz0:B, 5vz0:D, 7zyy:A, 7zyy:C, 7zyy:B, 7zyy:D, 7zyz:A, 7zz0:A, 7zz1:A, 7zz2:A, 7zz3:A, 7zz3:C, 7zz3:B, 7zz3:D, 7zz4:A, 7zz5:A, 7zz6:D, 7zz6:A, 7zz8:A, 7zz8:C, 7zz8:D, 7zz8:B
5 5vyz:C 1083 51 0.1186 0.0194 0.4118 0.26 5vyw:A, 5vyw:B, 5vyw:C, 5vz0:C
6 6qe7:A 291 90 0.1299 0.0790 0.2556 0.41 6qe7:B, 6qe7:C
7 6qe7:A 291 92 0.1017 0.0619 0.1957 7.7 6qe7:B, 6qe7:C
8 4amw:A 1025 82 0.1412 0.0244 0.3049 1.4 4amw:B, 4amw:C, 4amw:D, 4amx:A, 4amx:B, 4amx:C, 4amx:D, 2x2i:A, 2x2i:B, 2x2i:C, 2x2i:D, 2x2j:A, 2x2j:B, 2x2j:C, 2x2j:D
9 3bg5:A 1137 42 0.0847 0.0132 0.3571 1.5 3bg5:C, 8gk8:A, 8gk8:B, 3hb9:A, 3hb9:C, 3hbl:A, 3hbl:C, 4hnt:A, 4hnt:C, 4hnu:A, 4hnu:C, 4hnv:A, 4hnv:C
10 6tuk:B 393 97 0.1695 0.0763 0.3093 1.5
11 4hnv:B 1033 41 0.0847 0.0145 0.3659 1.6 8gk8:D
12 3bg5:B 1074 41 0.0847 0.0140 0.3659 1.6 3bg5:D, 8gk8:C, 3hb9:B, 3hb9:D, 3hbl:B, 3hbl:D, 4hnt:B, 4hnt:D, 4hnu:B, 4hnu:D, 4hnv:D, 3ho8:A, 3ho8:C, 3ho8:B
13 3ho8:D 934 42 0.0847 0.0161 0.3571 1.6
14 4wut:A 290 72 0.1299 0.0793 0.3194 1.6
15 6er9:A 531 125 0.1638 0.0546 0.2320 3.7 6er9:B, 6era:A, 6era:B, 3gwd:A, 3gwf:A, 4rg3:A, 4rg4:A, 3ucl:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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