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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AVPTTLEWNLNVGLTMIVCNIVAIAFAKYTMKEPGAGPKLPGEAFFGGMGLPALLATTSFGHLLGAGVILGLASLGAL

The query sequence (length=78) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6vpv:K 78 78 1.0000 1.0000 1.0000 5.72e-50 6vpv:k, 6vpv:9
2 6kif:K 78 78 0.6026 0.6026 0.6026 8.58e-26 6kif:U, 6kif:m, 6kig:K, 6kig:U, 6kig:m
3 6k61:k 78 78 0.5385 0.5385 0.5385 2.65e-25 6jeo:aK, 6jeo:bK, 6jeo:cK, 6jeo:dK, 6k61:K, 6tcl:K1, 6tcl:K2
4 8asp:k 77 76 0.5769 0.5844 0.5921 6.48e-25 8am5:k, 8asl:k, 6nwa:K, 6nwa:k, 6nwa:T, 7umh:K, 7umh:T, 7umh:k
5 7fix:K1 79 73 0.5256 0.5190 0.5616 1.85e-19 7fix:K2, 7fix:K3, 6tra:K, 6trc:K, 6trc:k, 6trc:9, 6trd:K, 6trd:k, 6trd:9
6 4l6v:K 80 78 0.4872 0.4750 0.4872 2.76e-17 6hqb:K, 4l6v:k, 4l6v:0, 7o1v:K, 5oy0:K, 5oy0:k, 5oy0:8, 6uzv:K, 6uzv:k, 6uzv:8
7 7y7b:K 78 77 0.4231 0.4231 0.4286 5.29e-17 7y8a:K
8 6tcl:K 60 72 0.4103 0.5333 0.4444 4.02e-14 6tcl:KK
9 7s3d:K 75 77 0.5128 0.5333 0.5195 1.45e-13 7s3d:T, 7s3d:k
10 7y5e:KN 70 63 0.3590 0.4000 0.4444 4.50e-13 7y5e:K2, 7y7a:K7, 7y7a:Ko
11 8wm6:K 69 77 0.3846 0.4348 0.3896 4.85e-13 8wmj:K, 8wmv:K, 8wmw:K
12 7m75:K 47 56 0.3846 0.6383 0.5357 7.15e-13 4fe1:K, 1jb0:K, 7m76:K, 7m78:K, 3pcq:K, 6pfy:K, 6pfy:T, 6pfy:g, 6pgk:T, 6pgk:K, 6pgk:g, 5zf0:K1, 5zf0:K2, 5zf0:K3, 5zf0:K4, 5zf0:K6, 5zf0:K5
13 6kmx:aK 46 56 0.3590 0.6087 0.5000 2.32e-11 6kmx:bK, 6kmx:cK
14 4kt0:K 53 69 0.3718 0.5472 0.4203 3.20e-10
15 8wey:K 63 63 0.2949 0.3651 0.3651 1.85e-09
16 7qco:K 65 62 0.3077 0.3692 0.3871 1.13e-06 7qco:R, 7qco:r, 7qco:k
17 5zgb:K 59 63 0.2308 0.3051 0.2857 1.06e-04 7blz:K, 6fos:K, 5zgh:K
18 8bcv:K 88 59 0.2821 0.2500 0.3729 0.087 7ew6:K, 7ewk:K, 7f9o:K, 7f9o:n, 2wse:K, 5zji:K
19 8j6z:K 84 31 0.1795 0.1667 0.4516 0.12 7dkz:K, 8j7b:K, 5l8r:K, 4rku:K, 6yac:K, 6yez:K, 6zoo:K, 6zxs:K
20 7a4p:K 86 25 0.1667 0.1512 0.5200 0.65 6zzx:K, 6zzy:K
21 7dr2:aK 69 19 0.1410 0.1594 0.5789 0.68 7dr0:K, 7dr2:cK
22 7wfd:AK 65 29 0.1667 0.2000 0.4483 0.73 7wfe:BK, 7wg5:AK, 7wg5:BK
23 8wgh:K 83 31 0.1667 0.1566 0.4194 1.2
24 6igz:K 80 21 0.1410 0.1375 0.5238 1.3
25 8j7a:K 56 28 0.1538 0.2143 0.4286 2.0
26 7dz7:K 86 25 0.1667 0.1512 0.5200 2.7 7bgi:K, 7blx:K, 7d0j:K, 7dz8:K, 6ijj:K, 6ijo:K, 7r3k:K, 7zq9:K, 7zqc:K, 7zqd:K, 7zqd:K2
27 4y28:K 57 24 0.1410 0.1930 0.4583 6.2
28 4xk8:k 46 28 0.1667 0.2826 0.4643 6.2 4xk8:K
29 4zv1:A 226 32 0.1667 0.0575 0.4062 9.5 4zv2:A
30 3p5n:A 168 52 0.2564 0.1190 0.3846 9.9 3p5n:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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