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BioLiP
>protein
AVPKIRIAVPSKGRISEPAIRLLENAGVGLKDTVRKLFSKTQHPQIEVMFSRAADIPEFVADGAADLGITGYDLIVERGS
DVEILEDLKYGRASLVLAAPEDSTIRGPEDIPRGAVIATEFPGITENYLREHGIDAEVVELTGSTEIAPFIGVADLITDL
SSTGTTLRMNHLRVIDTILESSVKLIANRESYATKSGIIEELRTGIRGVIDAEGKRLVMLNIDRKNLDRVRALMPGMTGP
TVSEVLSDNGVVAVHAVVDEKEVFNLINRLKAVGARDILVVPIERIIP

The query sequence (length=288) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2vd3:A 289 289 1.0000 0.9965 0.9965 0.0 2vd3:B
2 7dah:C 288 294 0.3438 0.3438 0.3367 1.91e-49 7dah:F
3 4yb6:A 296 294 0.3264 0.3176 0.3197 4.84e-48 5ub9:A, 5ub9:B, 5ubg:A, 5ubg:B, 5ubh:A, 5ubh:B, 5ubi:A, 5ubi:B, 4yb5:A, 4yb5:E, 4yb5:B, 4yb5:C, 4yb5:F, 4yb5:D, 4yb6:E, 4yb6:B, 4yb6:C, 4yb6:F, 4yb6:D, 4yb7:B, 4yb7:C, 4yb7:D, 4yb7:E, 4yb7:I, 4yb7:K, 4yb7:A, 4yb7:F, 4yb7:G, 4yb7:H, 4yb7:J, 4yb7:L
4 1h3d:A 288 294 0.3611 0.3611 0.3537 1.97e-46 1q1k:A
5 6fca:A 209 206 0.2639 0.3636 0.3689 2.61e-35 6fct:A, 6fcw:A, 6fcy:A, 6fd9:A, 6ftt:E, 6ftt:H, 6ftt:G, 6ftt:F, 6fu2:C, 6fu2:D, 6fu7:C, 6fu7:D, 6fua:C, 6fua:D, 6r02:E, 6r02:F, 6r02:G, 6r02:H, 7z6r:C, 7z6r:D, 7z8u:A
6 5lht:A 284 283 0.3160 0.3204 0.3216 1.60e-33 5lhu:A, 1nh8:A, 5u99:A
7 6czm:E 342 322 0.3576 0.3012 0.3199 3.15e-32 6czm:A, 6czm:C, 6czm:D
8 6czm:F 315 313 0.3472 0.3175 0.3195 1.01e-26 6czm:B
9 1usy:G 203 192 0.2153 0.3054 0.3229 7.65e-25 1usy:F, 1usy:E, 1usy:H
10 1z7n:F 205 189 0.2222 0.3122 0.3386 6.77e-24 1z7m:G, 1z7m:E, 1z7m:H, 1z7n:E, 1z7n:G, 1z7n:H
11 7w7g:A 1528 100 0.0972 0.0183 0.2800 0.12
12 1jku:A 266 108 0.0903 0.0977 0.2407 0.37 1jku:F, 1jku:B, 1jku:C, 1jku:D, 1jku:E, 1jkv:A, 1jkv:F, 1jkv:B, 1jkv:C, 1jkv:D, 1jkv:E, 1o9i:A, 1o9i:F, 1o9i:B, 1o9i:C, 1o9i:D, 1o9i:E
13 4nre:A 675 57 0.0660 0.0281 0.3333 0.87 7laf:A, 7laf:B
14 4un1:A 145 25 0.0382 0.0759 0.4400 2.9 4un1:C
15 6u42:5H 135 48 0.0521 0.1111 0.3125 5.0
16 1xt8:B 251 88 0.0694 0.0797 0.2273 6.1 1xt8:A
17 2vr5:A 715 23 0.0382 0.0154 0.4783 6.6 2vr5:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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