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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AVPKIEMNFLNKPIVPDTTKVISNFLTHYLITEPVEHVEIEAKLGTLIDLETQNRFEFPVMNETILNPEFNLRTRFESDM
TASEHKYLNEFLNQAFRDSQKPGRLPFAYKHTKQVDLFYETESRDKIRVSKNQSDNQVLACVKKRRVADLFLYCPNDAFD
IRISISDELPVSMPSGNQQPSLTRLKDRVGYVHQEIKIDLTKTTQTERHELEVEFGNIADLRDRAQKAKDGMEAPLFRRV
QLFMDNVRILRREHS

The query sequence (length=255) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4pn1:B 261 262 0.9922 0.9693 0.9656 0.0 4pn1:A, 4pn1:C, 4pn1:D
2 1d8h:A 288 269 0.3255 0.2882 0.3086 4.80e-20 1d8h:B, 1d8h:C, 1d8i:A, 1d8i:B, 1d8i:C
3 6l7x:A 203 88 0.0941 0.1182 0.2727 7.04e-04 6l7w:A, 6l7y:A
4 6l7v:A 180 167 0.1412 0.2000 0.2156 0.009 6l7w:B
5 5xs2:A 366 53 0.0667 0.0464 0.3208 1.8 5cei:A, 5hbe:A, 5icp:A, 5idp:A, 6r3s:A, 6t41:A, 6y0a:A
6 6qf7:B 244 25 0.0471 0.0492 0.4800 1.8 6b74:B, 6b77:B, 6l63:A, 6l63:C, 6qf7:D, 8r8d:B, 8r8d:A, 6x0s:A, 6x0s:B, 6x0s:C, 6x0t:A, 6x0t:B, 6x0t:C
7 5nv3:A 467 53 0.0588 0.0321 0.2830 2.3 5nv3:E, 5nv3:B, 5nv3:F, 5nv3:C, 5nv3:G, 5nv3:D, 5nv3:H
8 8tun:C 258 88 0.0863 0.0853 0.2500 2.7 8tt3:C, 8tt3:D, 8tun:D
9 2vq1:B 213 49 0.0667 0.0798 0.3469 3.2 2vq1:F
10 7qt1:C 452 54 0.0627 0.0354 0.2963 5.0 7qsv:A, 7qsv:B, 7qsv:C, 7qsv:D, 7qsv:E, 7qsv:F, 7qsv:G, 7qsv:H, 7qsx:A, 7qsx:F, 7qsx:B, 7qsx:E, 7qsx:C, 7qsx:D, 7qsx:G, 7qsx:H, 7qsy:A, 7qsy:C, 7qsy:E, 7qsy:G, 7qsz:A, 7qsz:B, 7qsz:C, 7qsz:D, 7qt1:A, 7qt1:E, 7qt1:G, 7qvi:A, 7qvi:B, 7qvi:C, 7qvi:D, 7qvi:E, 7qvi:F, 7qvi:G, 7qvi:H, 7qvi:I, 7qvi:J, 7qvi:K, 7qvi:L, 7qvi:M, 7qvi:N, 7qvi:O, 7qvi:P
11 8u66:A 448 54 0.0667 0.0379 0.3148 5.7 8u66:B, 8u66:C, 8u66:D, 8u66:E, 8u66:F, 8u66:G, 8u66:H
12 6ayi:A 183 78 0.0706 0.0984 0.2308 5.9 6ayi:B, 6ayi:C, 6ayi:D
13 8jhz:A 2615 63 0.0784 0.0076 0.3175 8.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218