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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AVNNKPSLKYVPVPESQHDDFTSEPTTYTQLLASIRAAKSLKRLEHLVDTYADRFDAVHVAAAVARLPHLLKYREADLVD
MSASAVVLPSGMTRTRRKHGAQLRSGSAEVAARLAARVDAMLPQHVAHFFPRQAACSIWAFGELRRHGVIERMDSLPQVL
MSVTRGNLQPLRVHAAGVDFAQLLHGLAKLGHNDEPLLDALLPLVTERLGSMQQRELQMTVWALATLRRATPELLDEVAQ
QLLSTSTAFLLPSACASVFWSYAKTEGLARLSPRRRARVAAARVKLFDSLAATMMAQALLLAPQDVATTLWACSVLGYHH
SQLPAVLGDAVLRALPNCSDAEVASVLESLAHLGYHHAPLMDAVAAGILAEPVVSTEPVNIARVLYAYGVLARRGPRDLQ
LVGTLAEALVRRLARVERLDTVALACRGLGAFAYDDQAVLAQVAARTEQLLQTSTTGLEQLQAVLRCLDAGGCSYFQLAV
AAARMLDDRLRAGACRSAPLAVEVLYYSARQGVAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

The query sequence (length=584) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7pkt:O 584 584 1.0000 1.0000 1.0000 0.0
2 8a22:Xd 413 426 0.2329 0.3293 0.3192 2.64e-62 8apn:Xd, 8apo:Xd
3 6am0:F 178 141 0.0634 0.2079 0.2624 0.047 6am0:B
4 6gzv:A 269 43 0.0274 0.0595 0.3721 1.2 6zcl:A
5 4b28:A 437 66 0.0342 0.0458 0.3030 4.2
6 4r42:C 220 40 0.0223 0.0591 0.3250 4.6 6j42:A, 6j42:B, 6j42:C, 4r42:A, 4r42:B
7 3qfe:A 305 68 0.0462 0.0885 0.3971 4.6
8 5ket:A 328 153 0.0685 0.1220 0.2614 6.4 5ket:B
9 7qiy:L 104 63 0.0274 0.1538 0.2540 9.2 8auv:R, 8b2l:R1, 8jiw:BU, 7qiz:VA
10 2qsw:A 90 67 0.0325 0.2111 0.2836 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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