Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AVLQEEQANLWFSKGSFAGIEDDADEALEISQAQLLFENRRKGHRILDPEGLALGAVIASSKKAKRDLIDNSFNRYTFNE
DEGELPEWFVQEEKQHRIRQLPVGKKEVEHYRKRWREINARPIKKVAEAKARKKRRMLKRLEQTRKKAEAVVNTVDISER
EKVAQLRSLYKKAGLGKEKRHVTYVVAKKPAGVRGHFKVVDSRMKKDQRAQQRKEQKKK

The query sequence (length=219) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8fky:SJ 255 219 1.0000 0.8588 1.0000 2.48e-159 8fkx:SJ
2 8fkv:SJ 340 146 0.5708 0.3676 0.8562 2.53e-84 8fkp:SJ, 8fkq:SJ, 8fks:SJ, 8fkt:SJ, 8fku:SJ, 8fkw:SJ
3 8fkv:SJ 340 37 0.1324 0.0853 0.7838 4.57e-07 8fkp:SJ, 8fkq:SJ, 8fks:SJ, 8fkt:SJ, 8fku:SJ, 8fkw:SJ
4 8v87:w 280 208 0.3516 0.2750 0.3702 3.15e-29
5 7nac:w 672 164 0.3059 0.0997 0.4085 1.09e-26 7naf:w, 7r6k:w, 7r7a:w, 7r7o:A, 7r7o:B
6 8esq:w 504 176 0.3059 0.1329 0.3807 4.93e-25 8esr:w
7 6elz:w 436 168 0.2968 0.1491 0.3869 4.54e-24 6em5:w
8 8ia0:CS 629 174 0.2831 0.0986 0.3563 6.81e-24 8i9w:CS, 8i9x:CS, 8i9y:CS, 8i9z:CS
9 7u0h:w 321 133 0.2420 0.1651 0.3985 2.68e-22
10 7ohr:w 198 99 0.1963 0.2172 0.4343 4.23e-16
11 8etc:w 420 33 0.0776 0.0405 0.5152 2.11e-04
12 8etc:w 420 39 0.1005 0.0524 0.5641 3.97e-04
13 7r6q:w 68 39 0.0776 0.2500 0.4359 0.004
14 6ylx:w 360 32 0.0685 0.0417 0.4688 0.11
15 3atg:A 242 98 0.1050 0.0950 0.2347 0.21
16 7ohv:w 69 56 0.0731 0.2319 0.2857 0.33
17 2uvf:A 571 60 0.0913 0.0350 0.3333 0.55
18 2iu8:A 346 58 0.0639 0.0405 0.2414 1.3 2iu8:B, 2iu8:C, 2iu9:A, 2iu9:B, 2iu9:C, 2iua:A, 2iua:C
19 6uz8:A 734 72 0.0959 0.0286 0.2917 2.7 6uz8:D, 6uz8:C, 6uz8:B, 6uza:A, 6uza:B, 6uza:C, 6uza:D
20 8act:A 873 46 0.0731 0.0183 0.3478 6.4 8act:B, 9f6c:B, 8qyp:A, 8qyq:A, 8qyq:B, 8qyr:B
21 7nxf:A 829 28 0.0639 0.0169 0.5000 8.4 7ny1:A, 7ny1:B, 7ny1:C, 7ny1:D, 7ny1:E, 7ny1:F
22 8w0a:C 636 75 0.0959 0.0330 0.2800 8.7 8w0a:A
23 4ys6:A 324 57 0.0822 0.0556 0.3158 9.0
24 9bha:A 793 74 0.0959 0.0265 0.2838 9.1 5a9f:A, 5aga:A, 9bh8:A, 9bh8:B, 9bh9:A, 9bh9:B, 9bha:B, 9c5q:C, 9c5q:A
25 4pa0:A 974 46 0.0731 0.0164 0.3478 9.7 4db1:A, 4db1:B, 8efe:A, 8efh:A, 9f6c:A, 6fsa:A, 6fsa:B, 5n69:A, 5n69:B, 5n6a:A, 8qyu:A

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218