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BioLiP
>protein
AVLFADANQRGVHKHIFESDADVGADIAFNATPRSMVVLSGVWRLYREPNFQSPYEAEFGPGIYPSIADYGINVIGSMKR
IS

The query sequence (length=82) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5ht7:A 82 82 1.0000 1.0000 1.0000 2.53e-57 5ht7:B, 5ht7:C
2 2k1w:A 85 79 0.3293 0.3176 0.3418 5.18e-04 5ht9:A, 5ht9:B, 3hz2:A, 3hz2:B, 3hz2:C, 3hz2:D
3 2bv2:A 83 72 0.2561 0.2530 0.2917 0.004 2bv2:B
4 4iau:A 161 60 0.2195 0.1118 0.3000 0.072
5 7ev8:A 328 24 0.1220 0.0305 0.4167 0.66
6 4zpj:A 371 59 0.2195 0.0485 0.3051 0.96
7 6m7d:A 412 24 0.1098 0.0218 0.3750 1.7
8 5f6d:A 156 43 0.1829 0.0962 0.3488 2.6 5f6u:A, 5f6v:A, 5f6w:A, 5f6x:A, 5f6y:A, 6syf:A, 6syf:B, 6syf:C, 6syf:D
9 6zrd:A 411 53 0.2073 0.0414 0.3208 4.9 7m40:A, 4pby:B, 4pc0:A, 4pc0:B, 5xwr:A, 2yba:A
10 5ggi:B 551 32 0.1341 0.0200 0.3438 7.3 5ggi:A, 5ggj:A, 5ggj:B, 5ggk:A, 5ggk:B, 5ggl:A, 5ggl:B, 5ggn:A, 5ggn:B, 5ggo:A, 5ggo:B, 5ggp:A, 5ggp:B, 5xfc:A, 5xfc:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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