Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKYLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHPD
DR

The query sequence (length=82) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1hko:A 104 82 0.9878 0.7788 0.9878 1.93e-57 1aqa:A, 1cyo:A, 1ehb:A, 1es1:A, 1f03:A, 1f04:A, 1i5u:A, 1ib7:A, 1j0q:A, 1jex:A, 1lqx:A, 1lr6:A, 1m20:A, 1m2i:A, 1m2m:A, 1m59:A, 1nx7:A, 1sh4:A, 1u9m:A, 1u9m:B, 1u9m:C, 1u9m:D, 1u9m:E, 1u9m:F, 1u9u:A, 3x32:A, 3x33:A, 3x34:A, 3x35:A
2 2i96:A 108 82 0.9512 0.7222 0.9512 2.43e-55 4hin:A, 4hin:B, 4hin:C, 4hin:D, 2m33:A
3 1aw3:A 94 81 0.9146 0.7979 0.9259 1.14e-52 1axx:A, 2axx:A, 1b5a:A, 1b5b:A, 1bfx:A, 1blv:A, 1do9:A, 1mny:A
4 3ozz:B 82 82 0.8415 0.8415 0.8415 6.74e-50
5 2i89:A 90 81 0.7073 0.6444 0.7160 8.63e-42 2i89:B, 2i89:C, 2i89:D, 1icc:A, 1icc:B, 1icc:D, 1lj0:A, 1lj0:B, 1lj0:C, 1lj0:D, 3mus:B
6 1awp:A 86 81 0.5976 0.5698 0.6049 2.08e-35 1awp:B, 1b5m:A, 1eue:A, 1eue:B, 4hil:A, 4hil:B, 1icc:C, 3mus:A
7 3ner:B 91 81 0.6098 0.5495 0.6173 1.10e-34 3ner:A
8 2ibj:A 86 81 0.5854 0.5581 0.5926 9.16e-32
9 4b8n:B 90 74 0.3659 0.3333 0.4054 5.30e-13 4b8n:A, 4b8n:C, 4b8n:D
10 3lf5:A 87 72 0.3171 0.2989 0.3611 9.58e-13 3lf5:B
11 1cxy:A 81 80 0.3293 0.3333 0.3375 1.56e-12
12 8tgb:A 108 79 0.2927 0.2222 0.3038 5.09e-11 8tgb:B
13 1kbi:A 504 51 0.2683 0.0437 0.4314 5.42e-11 1fcb:A, 1fcb:B, 1kbi:B, 1kbj:A, 1kbj:B, 3ks0:A, 3ks0:B, 1lco:A, 1lco:B, 1ldc:A, 1ltd:A, 1ltd:B, 2oz0:A, 2oz0:B, 1qcw:A, 1qcw:B, 1sze:A, 1sze:B, 1szf:A, 1szf:B, 1szg:A, 1szg:B
14 1x3x:A 82 66 0.3049 0.3049 0.3788 4.48e-10 1x3x:B
15 7bwh:A 88 84 0.3049 0.2841 0.2976 1.13e-09
16 1sox:A 463 81 0.3415 0.0605 0.3457 1.56e-06 2a9a:A, 2a9a:B, 2a9b:A, 2a9c:A, 2a9c:B, 2a9d:A, 2a9d:B, 3hbp:A, 3hbq:A, 1sox:B
17 1mj4:A 79 73 0.2805 0.2911 0.3151 1.00e-05
18 1k6m:A 432 48 0.1585 0.0301 0.2708 0.52 1c7z:A, 1c7z:B, 1c80:A, 1c80:B, 1c81:A, 1fbt:A, 1fbt:B, 1k6m:B, 1tip:A, 1tip:B
19 3t58:B 504 32 0.1341 0.0218 0.3438 2.2 4p2l:A, 4p2l:B, 3t58:A, 3t58:C, 3t58:D, 3t59:A, 3t59:B, 3t59:C, 3t59:D
20 2axn:A 451 50 0.1585 0.0288 0.2600 3.0 5ajv:B, 5ajw:A, 5ajx:A, 5ajy:A, 5ajz:A, 5ak0:A, 4d4j:A, 4d4k:A, 4d4l:A, 4d4m:A, 2dwo:A, 2dwp:A, 6etj:A, 6hvh:A, 6hvi:A, 6hvj:A, 2i1v:B, 6ibx:A, 6iby:A, 6ibz:A, 6ic0:A, 4ma4:A, 3qpu:A, 3qpv:A, 3qpw:A
21 5lvf:A 142 24 0.1341 0.0775 0.4583 4.3 2l0i:A, 5m9d:A
22 8dyu:A 2562 29 0.1341 0.0043 0.3793 5.9 8dyv:A
23 8fcy:A 2864 29 0.1341 0.0038 0.3793 6.2 8fd6:A, 8fdt:A
24 8pqw:A 2892 29 0.1341 0.0038 0.3793 6.4 8pqy:A, 8pqz:A, 8pqz:J
25 5nug:A 2920 29 0.1341 0.0038 0.3793 6.5 5nug:B
26 4cc5:A 308 48 0.1951 0.0519 0.3333 6.8 4cc6:A, 5fpo:A, 5fpr:A
27 7z8g:A 3047 29 0.1341 0.0036 0.3793 7.0 8fdu:A, 7z8l:f
28 8ptk:f 4502 29 0.1341 0.0024 0.3793 8.0 8ptk:e
29 7z8f:e 4579 29 0.1341 0.0024 0.3793 8.4 5owo:A, 8pr2:f, 8ptk:m, 8ptk:n, 7z8f:f, 7z8f:m, 7z8f:n, 7z8h:A
30 8h4r:A 287 27 0.1098 0.0314 0.3333 8.9
31 7unj:A 218 18 0.0976 0.0367 0.4444 9.4 7unj:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218