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BioLiP
>protein
AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELLKTFIIGELHPD
DR

The query sequence (length=82) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1hko:A 104 82 0.9878 0.7788 0.9878 5.66e-57 1aqa:A, 1cyo:A, 1ehb:A, 1es1:A, 1f03:A, 1f04:A, 1i5u:A, 1ib7:A, 1j0q:A, 1jex:A, 1lqx:A, 1lr6:A, 1m20:A, 1m2i:A, 1m2m:A, 1m59:A, 1nx7:A, 1sh4:A, 1u9m:A, 1u9m:B, 1u9m:C, 1u9m:D, 1u9m:E, 1u9m:F, 1u9u:A, 3x32:A, 3x33:A, 3x34:A, 3x35:A
2 2i96:A 108 82 0.9512 0.7222 0.9512 8.48e-55 4hin:A, 4hin:B, 4hin:C, 4hin:D, 2m33:A
3 1aw3:A 94 81 0.9146 0.7979 0.9259 2.94e-52 1axx:A, 2axx:A, 1b5a:A, 1b5b:A, 1bfx:A, 1blv:A, 1do9:A, 1mny:A
4 3ozz:B 82 82 0.8659 0.8659 0.8659 2.24e-51
5 2i89:A 90 81 0.7073 0.6444 0.7160 1.41e-41 2i89:B, 2i89:C, 2i89:D, 1icc:A, 1icc:B, 1icc:D, 1lj0:A, 1lj0:B, 1lj0:C, 1lj0:D, 3mus:B
6 1awp:A 86 81 0.6220 0.5930 0.6296 5.22e-37 1awp:B, 1b5m:A, 1eue:A, 1eue:B, 4hil:A, 4hil:B, 1icc:C, 3mus:A
7 3ner:B 91 81 0.6341 0.5714 0.6420 2.54e-36 3ner:A
8 2ibj:A 86 81 0.5976 0.5698 0.6049 7.68e-33
9 4b8n:B 90 72 0.3902 0.3556 0.4444 1.90e-13 4b8n:A, 4b8n:C, 4b8n:D
10 3lf5:A 87 72 0.3171 0.2989 0.3611 3.19e-13 3lf5:B
11 1cxy:A 81 80 0.3293 0.3333 0.3375 4.70e-13
12 1x3x:A 82 79 0.3659 0.3659 0.3797 2.13e-11 1x3x:B
13 1kbi:A 504 49 0.2805 0.0456 0.4694 2.16e-11 1fcb:A, 1fcb:B, 1kbi:B, 1kbj:A, 1kbj:B, 3ks0:A, 3ks0:B, 1lco:A, 1lco:B, 1ldc:A, 1ltd:A, 1ltd:B, 2oz0:A, 2oz0:B, 1qcw:A, 1qcw:B, 1sze:A, 1sze:B, 1szf:A, 1szf:B, 1szg:A, 1szg:B
14 8tgb:A 108 76 0.2927 0.2222 0.3158 2.78e-11 8tgb:B
15 7bwh:A 88 84 0.3171 0.2955 0.3095 5.98e-11
16 1sox:A 463 81 0.3659 0.0648 0.3704 5.04e-08 2a9a:A, 2a9a:B, 2a9b:A, 2a9c:A, 2a9c:B, 2a9d:A, 2a9d:B, 3hbp:A, 3hbq:A, 1sox:B
17 1mj4:A 79 73 0.3049 0.3165 0.3425 3.85e-07
18 1k6m:A 432 48 0.1463 0.0278 0.2500 1.3 1c7z:A, 1c7z:B, 1c80:A, 1c80:B, 1c81:A, 1fbt:A, 1fbt:B, 1k6m:B, 1tip:A, 1tip:B
19 4jz6:A 484 55 0.2195 0.0372 0.3273 3.2
20 5lvf:A 142 24 0.1341 0.0775 0.4583 4.0 2l0i:A, 5m9d:A
21 2d2c:D 168 24 0.1341 0.0655 0.4583 4.3 2d2c:Q, 2e74:D, 2e75:D, 2e76:D, 4h0l:D, 4h13:D, 4i7z:D, 4pv1:D, 1vf5:D, 1vf5:Q
22 3t58:B 504 32 0.1220 0.0198 0.3125 7.6 4p2l:A, 4p2l:B, 3t58:A, 3t58:C, 3t58:D, 3t59:A, 3t59:B, 3t59:C, 3t59:D
23 2axn:A 451 50 0.1463 0.0266 0.2400 8.0 5ajv:B, 5ajw:A, 5ajx:A, 5ajy:A, 5ajz:A, 5ak0:A, 4d4j:A, 4d4k:A, 4d4l:A, 4d4m:A, 2dwo:A, 2dwp:A, 6etj:A, 6hvh:A, 6hvi:A, 6hvj:A, 2i1v:B, 6ibx:A, 6iby:A, 6ibz:A, 6ic0:A, 4ma4:A, 3qpu:A, 3qpv:A, 3qpw:A
24 1p5j:A 319 27 0.1341 0.0345 0.4074 8.2
25 7unj:A 218 17 0.0976 0.0367 0.4706 9.2 7unj:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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