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BioLiP
>protein
AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLRAQAGGDATANFEAVGHSTDARELSKTFIIGELHPD
DR

The query sequence (length=82) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1hko:A 104 82 0.9512 0.7500 0.9512 5.63e-55 1aqa:A, 1cyo:A, 1ehb:A, 1es1:A, 1f03:A, 1f04:A, 1i5u:A, 1ib7:A, 1j0q:A, 1jex:A, 1lqx:A, 1lr6:A, 1m20:A, 1m2i:A, 1m2m:A, 1m59:A, 1nx7:A, 1sh4:A, 1u9m:A, 1u9m:B, 1u9m:C, 1u9m:D, 1u9m:E, 1u9m:F, 1u9u:A, 3x32:A, 3x33:A, 3x34:A, 3x35:A
2 2i96:A 108 82 0.9146 0.6944 0.9146 8.61e-53 4hin:A, 4hin:B, 4hin:C, 4hin:D, 2m33:A
3 1aw3:A 94 81 0.8780 0.7660 0.8889 1.58e-50 1axx:A, 2axx:A, 1b5a:A, 1b5b:A, 1bfx:A, 1blv:A, 1do9:A, 1mny:A
4 3ozz:B 82 82 0.8049 0.8049 0.8049 5.35e-47
5 2i89:A 90 81 0.6707 0.6111 0.6790 5.35e-39 2i89:B, 2i89:C, 2i89:D, 1icc:A, 1icc:B, 1icc:D, 1lj0:A, 1lj0:B, 1lj0:C, 1lj0:D, 3mus:B
6 1awp:A 86 81 0.5610 0.5349 0.5679 1.42e-32 1awp:B, 1b5m:A, 1eue:A, 1eue:B, 4hil:A, 4hil:B, 1icc:C, 3mus:A
7 3ner:B 91 81 0.5732 0.5165 0.5802 6.31e-32 3ner:A
8 2ibj:A 86 81 0.5488 0.5233 0.5556 9.77e-29
9 4b8n:B 90 54 0.3171 0.2889 0.4815 9.43e-13 4b8n:A, 4b8n:C, 4b8n:D
10 1cxy:A 81 80 0.3049 0.3086 0.3125 9.51e-12
11 1kbi:A 504 49 0.2927 0.0476 0.4898 1.76e-11 1fcb:A, 1fcb:B, 1kbi:B, 1kbj:A, 1kbj:B, 3ks0:A, 3ks0:B, 1lco:A, 1lco:B, 1ldc:A, 1ltd:A, 1ltd:B, 2oz0:A, 2oz0:B, 1qcw:A, 1qcw:B, 1sze:A, 1sze:B, 1szf:A, 1szf:B, 1szg:A, 1szg:B
12 1x3x:A 82 76 0.3537 0.3537 0.3816 1.85e-11 1x3x:B
13 3lf5:A 87 72 0.2927 0.2759 0.3333 4.65e-11 3lf5:B
14 7bwh:A 88 79 0.3171 0.2955 0.3291 2.30e-10
15 8tgb:A 108 76 0.2927 0.2222 0.3158 2.87e-10 8tgb:B
16 1mj4:A 79 73 0.3049 0.3165 0.3425 2.05e-07
17 1sox:A 463 80 0.3293 0.0583 0.3375 6.29e-07 2a9a:A, 2a9a:B, 2a9b:A, 2a9c:A, 2a9c:B, 2a9d:A, 2a9d:B, 3hbp:A, 3hbq:A, 1sox:B
18 4cc5:A 308 48 0.2073 0.0552 0.3542 0.17 4cc6:A, 5fpo:A, 5fpr:A
19 1k6m:A 432 48 0.1463 0.0278 0.2500 0.83 1c7z:A, 1c7z:B, 1c80:A, 1c80:B, 1c81:A, 1fbt:A, 1fbt:B, 1k6m:B, 1tip:A, 1tip:B
20 6gyf:B 366 31 0.1829 0.0410 0.4839 2.2 6gye:A, 6gye:B, 6gyf:A, 6gzo:A, 6gzo:B
21 5lvf:A 142 24 0.1341 0.0775 0.4583 3.8 2l0i:A, 5m9d:A
22 8jzd:A 166 36 0.1829 0.0904 0.4167 4.5 8jzd:C
23 2axn:A 451 50 0.1463 0.0266 0.2400 4.8 5ajv:B, 5ajw:A, 5ajx:A, 5ajy:A, 5ajz:A, 5ak0:A, 4d4j:A, 4d4k:A, 4d4l:A, 4d4m:A, 2dwo:A, 2dwp:A, 6etj:A, 6hvh:A, 6hvi:A, 6hvj:A, 2i1v:B, 6ibx:A, 6iby:A, 6ibz:A, 6ic0:A, 4ma4:A, 3qpu:A, 3qpv:A, 3qpw:A
24 2dkc:A 536 42 0.1341 0.0205 0.2619 5.0 2dkc:B, 2dkd:A, 2dkd:B
25 7unj:A 218 17 0.0976 0.0367 0.4706 9.2 7unj:B
26 8dyu:A 2562 26 0.1220 0.0039 0.3846 9.8 8dyv:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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